SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MQD22.12 (Universal genetic code) : 331 aa
 vs  library
 searching atfca91 library

    326 residues in     1 sequences
The best scores are:                              s-w
ATFCA91, 326 bases, 591 checksum.                  (326)1741

>>ATFCA91, 326 bases, 591 checksum.                  (326 aa)
Smith-Waterman score: 1741;   79.751% identity in 321 aa overlap

               10        20         30        40        50         
MQD22. MQFSRGFNPFVILFCLAVVAP-IISADVAILRTDYYQKTCPDFHKIVREAVTTKQVQQPT
                  .:: . : .: : ::    :  ::::::::::.:::::.:: :: ::::
ATFCA9      MSSVINVLFVVLVFVPSIYSAPPPNLTKDYYQKTCPDFNKIVRETVTPKQGQQPT
                    10        20        30        40        50     

      60        70        80        90       100       110         
MQD22. TAAGTLRLFFHDCFLEGCDASVLIATNSFNKAERDDDLNDSLPGDAFDIVTRIKTALELS
       ::::::::::::::.::::::::::::::::::::::::.::::::::::::::::::::
ATFCA9 TAAGTLRLFFHDCFMEGCDASVLIATNSFNKAERDDDLNESLPGDAFDIVTRIKTALELS
          60        70        80        90       100       110     

     120       130       140       150       160       170         
MQD22. CPGVVSCADILAQATRDLVTMVGGPYFDVKLGRKDGFESKAHKVRGNVPMANQTVPDIHG
       :::::::::::::::::::::::::...::::::::::::::::.::.:.:::.:::. .
ATFCA9 CPGVVSCADILAQATRDLVTMVGGPFYEVKLGRKDGFESKAHKVKGNLPLANQSVPDMLS
         120       130       140       150       160       170     

     180       190       200       210       220       230         
MQD22. IFKKNGFSLREMVALSGAHTIGFSHCKEFSDRLYGSRADKEINPRFAAALKDLCKNHTVD
       :::::::.:.:.:::::.::::::::::::.:..  ..: :.: .::..:::::::  ..
ATFCA9 IFKKNGFTLKELVALSGGHTIGFSHCKEFSNRIF-PKVDPELNAKFAGVLKDLCKNFETN
         180       190       200        210       220       230    

     240       250       260       270       280       290         
MQD22. DTIAAFNDVMTPGKFDNMYFKNLKRGLGLLASDHILIKDNSTKPFVDLYATNETAFFEDF
        :.::: : .::::::::::::::::::::::::::.:: ::.:::.:::.:.:::::::
ATFCA9 KTMAAFLDPVTPGKFDNMYFKNLKRGLGLLASDHILFKDPSTRPFVELYANNQTAFFEDF
          240       250       260       270       280       290    

     300       310       320       330 
MQD22. ARAMEKLGTVGVKGDKDGEVRRRCDHFNNLNV
       :::::::: :::::.:::::::::::::.:::
ATFCA9 ARAMEKLGRVGVKGEKDGEVRRRCDHFNKLNV
          300       310       320      

Library scan:  0:00:00  total CPU time:  0:00:00