SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MQD22.11 (Universal genetic code) : 187 aa
 vs  library
 searching ststs15 library

    183 residues in     1 sequences
The best scores are:                              s-w
STSTS15, 183 bases, 1120 checksum.                 (183) 254

>>STSTS15, 183 bases, 1120 checksum.                 (183 aa)
Smith-Waterman score: 254;   31.217% identity in 189 aa overlap

                 10         20        30        40         50      
MQD22. MKLL--FYLVVFFLLLN-GFTANRVANSLIRDSCKKASKMSEPHY-YKFCIASISENPES
       :: :  :.:  :. :.:  : .. .:..::. .::. :: .:    : :: .:..  : :
STSTS1 MKHLSSFFL--FLSLFNLTFYGS-TAQNLIQTTCKSCSK-NESSITYGFCTSSLQAAPAS
                 10        20         30         40        50      

           60         70         80        90       100       110  
MQD22. Q--KVRNIDELIG-VGVKNAIS-NMTNVKGIVERILKDRKYTSKMSEKMLRVCVKLYSEG
       :   .:..    : ....  :  :.:...  :. .::: :  . .... :.::. :::..
STSTS1 QCATLRGL----GMISIR-LIRYNVTDTRCHVKMLLKD-KNLDLYNRSRLKVCLDLYSDA
         60            70         80         90       100       110

            120       130        140         150       160         
MQD22. TNLLTKCLEYIKLRDFDKVHNT-IRHARVVPRE--CEMGFNDDNKQKSPVTKENDVLFDT
          . : :  .:  .  : ... :. . ..     :: ::.. .   ::.: .::  :. 
STSTS1 IPTI-K-LA-MKSYNTKKYYDANIQISAIIATATTCEDGFKEKEGAVSPLTMRNDNTFQL
                 120       130       140       150       160       

     170        180       
MQD22. VDIAQS-FNYYAHIRPDIV
         :: : .:          
STSTS1 SAIALSVMNLVMNNNG   
       170       180      

Library scan:  0:00:00  total CPU time:  0:00:00