SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MPL12.12 (Universal genetic code) : 499 aa
 vs  library
 searching hvpepd1pr library

    354 residues in     1 sequences
The best scores are:                              s-w
HVPEPD1PR, 354 bases, 12B1 checksum.               (354)1504

>>HVPEPD1PR, 354 bases, 12B1 checksum.               (354 aa)
Smith-Waterman score: 1504;   63.187% identity in 364 aa overlap

               10        20        30        40        50        60
MPL12. MRLLLPFSSPLSATSSPSTPQFIPELPPPSQFDYSGLTKILKKSVIGTLTGALSLTLVFS

               70        80        90       100       110       120
MPL12. SPISSVAATNDPYLSVNPPSSSFESSLNHFDSAPEDCPNEEEADTEIQDDDIEPQLVTNE

              130       140       150       160       170       180
MPL12. GIVEEAWEIVNGAFLDTRSHSWTPETWQKQKDDILASPIKSRSKAHEVIKNMLASLGDQY
                        ::. :.:: :...:.::: . :::::.::..: .::::::: :
HVPEPD                 RRSRPWSPELWMQRKQDILQGSIKSRSRAHDIITKMLASLGDPY
                               10        20        30        40    

              190       200       210       220       230       240
MPL12. TRFLSPDEFSRMSKYDITGIGINLREVSDGGGNVKLKVLGLVLDSAADIAGVKQGDEILA
       ::::: ..::.:::::.::::.:.::. : .:...: ::::.::. :. :::.::::.:.
HVPEPD TRFLSSSDFSKMSKYDMTGIGLNIREIPDDNGSLRLVVLGLILDGPANSAGVRQGDELLS
           50        60        70        80        90       100    

              250       260       270       280       290       300
MPL12. VNGMDVSGKSSFEVSSLLQGPSKTFVVLKVKHGKCGPVKSLKIQRQVNAQTPVSYRLEKV
       ::: :: :::.:.:::.::::..:::..:::::.::::.:.:.:::. :.::. ::::: 
HVPEPD VNGSDVRGKSAFDVSSMLQGPKETFVTIKVKHGNCGPVESMKVQRQMAARTPIFYRLEKR
          110       120       130       140       150       160    

              310       320       330       340       350       360
MPL12. DNGTVSVGYIRLKEFNALARKDLVIAMKRLLDKGASYFVMDLRDNLGGLVQAGIETAKLF
       :: . :::::..:::::.:.:::: :.::: ..::::::.::::::::::::::: ::::
HVPEPD DNENSSVGYIHIKEFNAVAKKDLVSALKRLQNSGASYFVLDLRDNLGGLVQAGIEIAKLF
          170       180       190       200       210       220    

              370        380       390       400       410         
MPL12. LDEGDTVIYT-AGRDPEAQKTVVSDKKPLITAPLIVMVNNRTASASEIVSNLKRFNPRET
       :..::::::: :: : ..:.:.:.:. ::.:.:..:.::::::::::::           
HVPEPD LNKGDTVIYTTAG-DRQVQNTIVADSGPLVTTPVMVLVNNRTASASEIV-----------
          230        240       250       260       270             

     420       430       440        450       460       470        
MPL12. LLFLDVKRMICVIFLQVASALHDNCKA-VLVGERTYGKGLIQSVYELRDGSGVVVTIGKY
                        :::::::::. :  ..::.::::::::.::.::::.:::.:::
HVPEPD -----------------ASALHDNCKSCVSSARRTFGKGLIQSVFELHDGSGIVVTVGKY
                             280       290       300       310     

      480       490                           
MPL12. VTPNHMDINGGGIEPDFRNLP                  
       ::::: :::: ::.::.: ::                  
HVPEPD VTPNHKDINGDGIKPDYRRLPDLNEARDYLLRCQSKKLS
         320       330       340       350    

Library scan:  0:00:00  total CPU time:  0:00:01