SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MPL12.11 (Universal genetic code) : 443 aa
 vs  library
 searching atorpc library

    363 residues in     1 sequences
The best scores are:                              s-w
ATORPC, 363 bases, 1383 checksum.                  (363) 700

>>ATORPC, 363 bases, 1383 checksum.                  (363 aa)
Smith-Waterman score: 700;   34.933% identity in 375 aa overlap

               10        20        30        40        50        60
MPL12. MANDGNGDNNDDPLRQYLMNPRINPPPPSLLTLPENNDVTIPMPITPLELKNRLIFGSFV

               70        80          90          100       110     
MPL12. RSRKESSLPIDALSQNPSTSSSATTSF--SDSTDLL---LPLTEPNKPVRKSKPTINFHR
                         .:..: : .  ... : .   . :.  ..  :: .    ..:
ATORPC                  MSSDAARTPLLPTEKIDTMAQDFNLNSRTSSSRKRR----LRR
                                10        20        30             

         120           130         140       150       160         
MPL12. SKTAPAMAAINN----ISHPND-P-KTDQQSDSKTIVNQAVALLVVYLSLGVLIYWLNRD
       :..::    . :    :..:   : :  . :: .  . ... .:..::..:.: ..: ::
ATORPC SRSAPRGDCMYNDDVKIDEPPPHPSKIPMFSDLNPNLRRVIMFLALYLTIGTLCFYLVRD
      40        50        60        70        80        90         

     170       180       190       200       210       220         
MPL12. SYNVKQTHPVVDALYFCIVTMCTIGYGDITPDSVVTKLFSIFFVLVGFGFMDILLSGMVT
       . . ..:  :::::::::::: :.::::..:.: ...:..  ::. :. ..  :::  . 
ATORPC QISGHKTSGVVDALYFCIVTMTTVGYGDLVPNSSASRLLACAFVFSGMVLVGHLLSRAAD
     100       110       120       130       140       150         

     230       240       250       260       270        280        
MPL12. YVLDLQENYMLETARNESLNLNDRDKVRSYIIDVKKGRMRIR-LKVGLALGVVVLCLGFG
       :... ::  .:  : .   ...  : ..    ... ...: .   . :.: ::.. .:  
ATORPC YLVEKQEA-LLVRAFHLRQSFGPTDILK----ELHTNKLRYKCYATCLVL-VVLFIVGTI
     160        170       180           190       200        210   

      290       300       310        320       330       340       
MPL12. VLIMHFVEKIGWLDSFYFSVMS-VTTVGYGDRAFNTLAGRLLAAMWLLVSTLAVARAILF
        :.:  :::.  ...::  : : :::.::::..::. ::::.:..:.:.::. .:. .:.
ATORPC FLVM--VEKMPVISAFY-CVCSTVTTLGYGDKSFNSEAGRLFAVFWILTSTICLAQFFLY
             220        230       240       250       260       270

       350       360         370       380       390       400     
MPL12. LAESRVDKRNRERA--KKVLGESMSISQFLDADIDCNGCVSKAEFVIYKLKKMDKITEKD
       .::  .. .:..::  : :: . .. ...  ::.: .: :. :::..::::.: :: :::
ATORPC VAE--LNTENKQRALVKWVLTRRITNNDLEAADLDEDGVVGAAEFIVYKLKEMGKIDEKD
                280       290       300       310       320        

         410       420        430       440   
MPL12. INPIGFQFDKLDRTNSGRITLLDL-LESSTKDLPTATSI
       :. :  .:..::  .:: .:  :. : ..:...      
ATORPC ISGIMDEFEQLDYDESGTLTTSDIVLAQTTSQIQR    
      330       340       350       360       

Library scan:  0:00:00  total CPU time:  0:00:01