SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MPL12.10 (Universal genetic code) : 303 aa
 vs  library
 searching atorpc library

    363 residues in     1 sequences
The best scores are:                              s-w
ATORPC, 363 bases, 1383 checksum.                  (363) 386

>>ATORPC, 363 bases, 1383 checksum.                  (363 aa)
Smith-Waterman score: 386;   30.000% identity in 340 aa overlap

                                              10        20         
MPL12.                                MPIRTLMVKIRITPDRVNRFINN--K-D-
                                         : :  . : .: : . . :.  : : 
ATORPC MSSDAARTPLLPTEKIDTMAQDFNLNSRTSSSRKRRLR-RSRSAP-RGDCMYNDDVKIDE
               10        20        30         40         50        

           30             40          50        60          70     
MPL12. -PLHQYLLPL-----PENNDVTI--SMPMTPSEFKNRLLFGSLP-RSSSDPTD-LQF---
        : :   .:.     :.   : .  .. .: . .   :.  ..  ...:  .: : :   
ATORPC PPPHPSKIPMFSDLNPNLRRVIMFLALYLTIGTLCFYLVRDQISGHKTSGVVDALYFCIV
       60        70        80        90       100       110        

              80        90       100          110                  
MPL12. TEPNVP-PSLFSLPEHNDDTATDMAPDQETEQS---VSKSIARQA--L-----ALLV--V
       :  .:   .:  .:  :. .:. .     . ..   :.. ..: :  :     ::::   
ATORPC TMTTVGYGDL--VP--NS-SASRLLACAFVFSGMVLVGHLLSRAADYLVEKQEALLVRAF
      120         130          140       150       160       170   

     120         130        140        150        160       170    
MPL12. YL--SLGVLIYWLTLDSDNA-YQTHPVAVALY-FFVV-TFCGFLIVHFVVKIGWLDSF-C
       .:  :.:       : ...  :. . . ..:  .:.: :.  ::..  : :.  ...: :
ATORPC HLRQSFGPTDILKELHTNKLRYKCYATCLVLVVLFIVGTI--FLVM--VEKMPVISAFYC
           180       190       200       210           220         

            180       190       200       210       220         230
MPL12. F-SVMMVTTVGFGDRAFNTWLGTFLAAVWLLVSTLAVARAFLFLADARADKRNRERA--K
         :.  :::.:.::..::.  : ..:. :.:.::. .:. ::..:.  ..  :..::  :
ATORPC VCST--VTTLGYGDKSFNSEAGRLFAVFWILTSTICLAQFFLYVAELNTE--NKQRALVK
     230         240       250       260       270         280     

              240       250       260       270       280       290
MPL12. KVLGESISISQFFAADIDNDGRLSLAEFAIYKLKQMEKITQEDFIQICNQFDKLDRTQSG
        :: . :. ... :::.:.:: .. ::: .::::.: :: ..:.  : ..:..::  .::
ATORPC WVLTRRITNNDLEAADLDEDGVVGAAEFIVYKLKEMGKIDEKDISGIMDEFEQLDYDESG
         290       300       310       320       330       340     

              300        
MPL12. RITLVDLTTA--TSV   
        .:  :.. :  ::    
ATORPC TLTTSDIVLAQTTSQIQR
         350       360   

Library scan:  0:00:00  total CPU time:  0:00:00