SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MOK9.P7 (Universal genetic code) : 86 aa
 vs  library
 searching pfpb_soltu library

    552 residues in     1 sequences
The best scores are:                              s-w
PFPB_SOLTU, 552 bases, F93 checksum.               (552) 276

>>PFPB_SOLTU, 552 bases, F93 checksum.               (552 aa)
Smith-Waterman score: 276;   50.000% identity in 88 aa overlap

PFPB_S XQVSGHRRYAAVYSEVQNSRLDHPLPLPSVLGSPFKVVDGPPSSAAGHPEEIAKLFPSLY
               10        20        30        40        50        60

PFPB_S GQPHVSLVPDDSGDVAMNQILKIGVVLSGGQAPGGHNVISGIFDYLQTHCKGSTMYGFRG
               70        80        90       100       110       120

PFPB_S GPAGVMKGKYVVLTPEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVV
              130       140       150       160       170       180

PFPB_S IGGDDSNTNACLLAENFRSKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYAEMIG
              190       200       210       220       230       240

                                                          10       
MOK9.P                                            EIFKKKLTLNNVADDIV
                                                  :.: :::::.::.: :.
PFPB_S NVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNVTLIGEEVFAKKLTLKNVTDYIA
              250       260       270       280       290       300

        20         30         40        50        60        70     
MOK9.P DIMCKQAKNCYN-DVIFV-LGLIKFIYEVRELISELNEVLAKENIEEEGQWKNNFKEETL
       :..::.:.. ::  ::..  ::: :: ::..::.::::.::.. ..: : ::...  . :
PFPB_S DVVCKRAESGYNYGVILIPEGLIDFIPEVQQLIAELNEILAHDVVDEAGVWKKKLTPQCL
              310       320       330       340       350       360

          80                                                       
MOK9.P KIFEFLLQNIQ                                                 
       ..::.:   ::                                                 
PFPB_S ELFELLPLAIQEQLLLERDPHGNVQVAKIETEKMLIQMVETELDQRKQKGAYNAQFKGQF
              370       380       390       400       410       420

PFPB_S HFFGYEGRCGLPSNFDSTYCYALGYGAGSLLQSGKTGLISSVGNLAAPVEELTVGGTALT
              430       440       450       460       470       480

PFPB_S ALMDVERRHGKFKPVIKKAMVELEGAPFKKFASKREEWALNNRYINPGPIQFVGPVANKV
              490       500       510       520       530       540

PFPB_S NHTLLLELGVDA
              550  

Library scan:  0:00:00  total CPU time:  0:00:00