SSEARCH searches a sequence database using the Smith-Waterman algorithm version 2.0u54, July. 1996 Please cite: T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; W.R. Pearson (1991) Genomics 11:635-650 >MOK9.P3 (Universal genetic code) : 124 aa vs library searching atfca15 library 1996 residues in 1 sequences The best scores are: s-w ATFCA15, 1996 bases, 2385 checksum. (1996) 104 >>ATFCA15, 1996 bases, 2385 checksum. (1996 aa) Smith-Waterman score: 104; 28.000% identity in 150 aa overlap ATFCA1 MFDDQEIERSQTIAPALIKAIKESRISIILLSKNYASSSWCLDELLEIVKCKEAMGQIVM 10 20 30 40 50 60 ATFCA1 TVFYGVDPSDVRKQTGEFGRSFNETCSRSTKEKRRKWSQALNHVGNIAGEHFQNWDNESK 70 80 90 100 110 120 ATFCA1 MIEKISRDISNKLNSTISRDFDDMVGLEAHLEEMKYLLDLDYKDGAMIVGICGPAGIGKT 130 140 150 160 170 180 ATFCA1 TIARALYSLLLSSFQLSCFVENLSGSDNRGLDEYGFKLRLQEQLLSKILNQNGMRIYHLG 190 200 210 220 230 240 ATFCA1 AIQERLCDQKVLIVLDDVNDLKQLEALANETSWFGPGSRIIVTTEDKGLLEQHGINKTYH 250 260 270 280 290 300 ATFCA1 VGFPSIEEALEIFCIYAFRKSSPPDGFKKLTKRVTNVFDNLPLGLRVMGSSLRGKGEDEW 310 320 330 340 350 360 ATFCA1 EALLDRLETSLDRNIEGALRVGYDSLQEEEQALFLHIAVFFNYNKDEHVIAMLADSNLDV 370 380 390 400 410 420 ATFCA1 KQGLKILTNKSLVYRSTSGKIVMHKLLQQVGRKAIQRQEPWKRHILIDAHEICYVLENDT 430 440 450 460 470 480 ATFCA1 DTRAALGISLDTSGINKVIISEGAFKRMRNLRFLSVYNTRYVKNDQVDIPEDLEFPPHLR 490 500 510 520 530 540 ATFCA1 LLRWEAYPKLDMKESQLEKLWQGTQPLTNLKKMDLTRSSHLKELPDLSNATNLERLELSY 550 560 570 580 590 600 ATFCA1 CKSLVEIPSSFSELRKLETLVIHNCTKLEVVPTLINLASLDFFNMHGCFQLKKFPGISTH 610 620 630 640 650 660 ATFCA1 ISRLVIDDTLVEELPTSIILCTRLRTLMISGSGNFKTLTYLPLSLTYLDLRCTGGCRNLK 670 680 690 700 710 720 ATFCA1 SLPQLPLSIRWLNACDCESLESVACVSSLNSFVDLNFTNCFKLNQETRRDLIQQSFFRSL 730 740 750 760 770 780 10 20 MOK9.P LLKSCIVISLPGSL---REEGLL-V .:.:.::: : : :.. :. . ATFCA1 RILPGREVPETFNHQAKGNVLTIRPESDSQFSASSRFKACFVIS-PTRLITGRKR-LISL 790 800 810 820 830 30 40 50 60 70 MOK9.P YCVGSAKTVTPSTNFIIVLAYLIGSTIGT-S----LFISRLA-RQRIFSGQGIVRVLHTF : .:. : : . : .. :: : :: . :.: : .. ..: : ATFCA1 LCRLISKN-GDSINEVYHCFSLPDQSPGTQSEHLCLFHYDFHDRDRYFEVDS--EILFEF 840 850 860 870 880 890 80 90 100 110 MOK9.P LLR--D------CSNMKFNNRAIEMQLKTKLKNI---FLTTSVIVDI------HTCKSDK : :. .... :: :. . .: . : .. :. : ::::: ATFCA1 SCTPSDAYEIVQCGVGTYGEE-IE-QI-SDWSNASEEIETENISDDVNQYRDRHPCKSDK 900 910 920 930 940 950 120 MOK9.P VSKVAN .:: :: ATFCA1 ASKEANHLYLIYMPLNNFSKEKELKTDASMKTDGMADPSSYVNHDRDIDQALVSLKKGTQ 960 970 980 990 1000 1010 ATFCA1 LLKYSRKGRPKFRSFRLSPAVFRRYLRPEKDYLSFSLIYHNGDRSLDLICKDKAETEVWF 1020 1030 1040 1050 1060 1070 ATFCA1 AGLKSLIRQNRNKQAKSEIPEIHDSDCFSTGRPSTASIDFAPNNTRRGRTSIDLGIQNSP 1080 1090 1100 1110 1120 1130 ATFCA1 TKFGSSDVGYERGNMLRPSTDGFRISVSSTPSCSTGTSGPDDIESLGDVYVWGEVWSDGI 1140 1150 1160 1170 1180 1190 ATFCA1 SPDGVVNSTTVKIDIACGVRHIALVTRQGEVFTWEEEAGGRLGHGIQVDVCRPKLVEFLA 1200 1210 1220 1230 1240 1250 ATFCA1 LTNIDFVACGEYHTCAVSTSGDLFTWGDGIHNVGLLGHGSDLSHWIPKRVSGPVEGLQVL 1260 1270 1280 1290 1300 1310 ATFCA1 SVACGTWHSALATANGKLFTFGDGAFGVLGHGDRESVSYPKEVKMLSGLKTLKVACGVWH 1320 1330 1340 1350 1360 1370 ATFCA1 TVAIVEVMNQTGTSTSSRKLFTWGDGDKNRLGHGNKETYLLPTCVSSLIDYNFNQIACGH 1380 1390 1400 1410 1420 1430 ATFCA1 TFTVALTTSGHVFTMGGTSHGQLGSSNSDGKLPCLVQDRLVGEFVEEISCGDHHVAVLTS 1440 1450 1460 1470 1480 1490 ATFCA1 RSEVFTWGKGSNGRLGHGDKDDRKTPTLVEALRERHVKSISCGADQSVCSGCRQAFGFTR 1500 1510 1520 1530 1540 1550 ATFCA1 KRHNCYNCGLVHCHACSSKKALKAALAPTPGKPHRVCDACYTKLKAGESGYNSNVANRNS 1560 1570 1580 1590 1600 1610 ATFCA1 TTPTRSLDGTGRPDRDIRSSRILLSPKTEPVKYSEVRSSRSESSIVRASQVPALQQLRDV 1620 1630 1640 1650 1660 1670 ATFCA1 AFPSSLSAIQNAFKPVASSSTSTLPSGTRSSRISSPPRSSGFSRGMIDTLKKSNGVINKE 1680 1690 1700 1710 1720 1730 ATFCA1 MTKLQSQIKNLKEKCDNQGTEIQRLKKTAREASDLAVKHSSKHKAATEVMKSVAEHLREL 1740 1750 1760 1770 1780 1790 ATFCA1 KEKLPPEVSRCEAFESMNSQAEAYLNASEASESCLPTTSLGMGQRDPTPSTNTQDQNIEE 1800 1810 1820 1830 1840 1850 ATFCA1 KQSSNGGNMRSQEPSGTTEASSSSKGGGKELIEQFEPGVYVTYVLHKNGGKIFRRVRFSF 1860 1870 1880 1890 1900 1910 ATFCA1 FVANGDLMSIKQKNGGIAKKIGCLRVPTPTQPQPPASDSVPTPTQPQPPASDSVPTPTQP 1920 1930 1940 1950 1960 1970 ATFCA1 QPPASPTQPNSDQAEDSKEVLDES 1980 1990 Library scan: 0:00:00 total CPU time: 0:00:00