SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MOJ9.9 (Universal genetic code) : 353 aa
 vs  library
 searching a57223 library

    311 residues in     1 sequences
The best scores are:                              s-w
A57223, 311 bases, 1E91 checksum.                  (311) 186

>>A57223, 311 bases, 1E91 checksum.                  (311 aa)
Smith-Waterman score: 186;   24.537% identity in 216 aa overlap

A57223 MMNKNSRVHTDSTIRNTFSTEIGIGILANSFLLLFHIFKFIRGQRSRLTDLPIGLLSLIH
               10        20        30        40        50        60

                                                     10          20
MOJ9.9                                       MGCCSSDCFVYFILSI--ALAF
                                             .. :.. :    .::.  :...
A57223 LLMLLMGAFIAIDIFISWRGWDDIICKFLVYLYRSFRGLSLCTT-C----MLSVLQAITL
               70        80        90       100            110     

                    30         40            50        60        70
MOJ9.9 MAISTTL-----RSPPD-SEPTIPIA----FSSSSPSLSLNASNTLRQSNFKAIATLLHI
          :. :     .::   :   : ..    : ::   .:.::. .:  .::  ..   .:
A57223 SPRSSCLAKFKHKSPHHVSCAIISLSILYMFISSHLLVSINATPNLTTNNFMQVTQSCYI
         120       130       140       150       160       170     

               80        90       100       110        120         
MOJ9.9 SPEIFLSSSPNTTLFAIEDASFFNTSSLHPLFLKQLLHYHTLPLM-LSMDDLLKK--PQG
        :  .: .:  .::.::.: :...   :   ... ::  :   .. :.  .:  :  :. 
A57223 IPLSYLMQSMFSTLLAIRDISLISLMVLSTCYMEVLLCRHRNQIQHLQGTNLSPKASPEQ
         180       190       200       210       220       230     

       130         140          150       160       170       180  
MOJ9.9 TCLPTLLHHKS--VQIS---TVNQESRTAEVNHVRITHPDMFLGDSLVIHGVIGPFSPLQ
           :.:   .  : .:   .. . :::  .:     . ..:. :   :.....::  ..
A57223 RATQTILMLMTFFVLMSIFDSIVSCSRTMYLNDPTSYYIQIFVVD---IYATVSPFV-FM
         240       250       260       270       280           290 

            190         200       210       220       230       240
MOJ9.9 PHSDHLIH--TPLCQSDTTNKTSNNEEVPVSIDWTRIVQLLSSNGFVPFAIGLHSVLNRI
         . :...    .:                                              
A57223 STGKHIVNFLKSMCVRVKNV                                        
             300       310                                         

              250       260       270       280       290       300
MOJ9.9 VNDHNHHKNLTGVTILATPNLVSLSSASPFLYEVVRHHILVQRLTYKDFASMSDKATVKT

              310       320       330       340       350   
MOJ9.9 LDPYQDLTITRRNVNSSGGDFMISGVEIVDPDMFSSSNFVIHGISHTLEIPHV

Library scan:  0:00:00  total CPU time:  0:00:00