SSEARCH searches a sequence database using the Smith-Waterman algorithm version 2.0u54, July. 1996 Please cite: T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; W.R. Pearson (1991) Genomics 11:635-650 >MOJ9.24 (Universal genetic code) : 521 aa vs library searching s51529 library 549 residues in 1 sequences The best scores are: s-w S51529, 549 bases, 530 checksum. (549)1201 >>S51529, 549 bases, 530 checksum. (549 aa) Smith-Waterman score: 1201; 45.098% identity in 510 aa overlap MOJ9.2 MGSFDR--QRA--- .: :: .:. S51529 MAASSGTIDAPTASSSFSFSTASSFMSSFTDLLASDAYSGGSVSRGLG--DRIAERTGSG 10 20 30 40 50 10 20 30 40 50 60 MOJ9.2 VPKFKTATPSP-LPLS-P--SP--YFTMPPGLTPADFLDSPLLFTSSNILPSPTTGTFPA :::::. : : :::: : :: ::..::::.:...::::.:..::::::::::::::: S51529 VPKFKS-LPPPSLPLSSPAVSPSSYFAFPPGLSPSELLDSPVLLSSSNILPSPTTGTFPA 60 70 80 90 100 110 70 80 90 MOJ9.2 QSLNYNN--NGLLID-KNEIK-----------------YEDTT-----------PPLFLP :..:..: :. : :.: : :::. ::. S51529 QTFNWKNDSNASQEDVKQEEKGYPDFSFQTNSASMTLNYEDSKRKDELNSLQSLPPVTTS 120 130 140 150 160 170 100 110 120 130 140 MOJ9.2 S-MVTQ----PLPQLD---LFKSEIMSSNKTSDDGYNWRKYGQKQVKGSENPRSYFKCTY . : .: . . :. . .. ::::::::::::::::::::::::.:::. S51529 TQMSSQNNGGSYSEYNNQCCPPSQTLREQRRSDDGYNWRKYGQKQVKGSENPRSYYKCTH 180 190 200 210 220 230 150 160 170 180 190 MOJ9.2 PNCLTKKKVETSLVKGQMIEIVYKGSHNHPKPQSTKRSSS-TA-----IAAHQ-NS---- ::: :::::: .: ::. ::::::.:::::::::.:::: :: .::.. :. S51529 PNCPTKKKVERAL-DGQITEIVYKGAHNHPKPQSTRRSSSSTASSASTLAAQSYNAPASD 240 250 260 270 280 290 200 210 MOJ9.2 -------SNGDGK-D-----------IG-------------------EDETEAKRWKRE- :::.:. : .: ::: .::::: : S51529 VPDQSYWSNGNGQMDSVATPENSSISVGDDEFEQSSQKRESGGDEFDEDEPDAKRWKVEN 300 310 320 330 340 350 220 230 240 250 260 MOJ9.2 EN----------VKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFTGC :. :.:::::::::::::::::::::::::::::::::::::::::: :: S51529 ESEGVSAQGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSQGC 360 370 380 390 400 410 270 280 290 300 310 MOJ9.2 FVRKHVERAFQDPKSVITTYEGKHKHQIPTPR--------RG--PVLRSAAMASPLLPTS :::::::: .: .::::::::::.:..:. : :: : .:::: . :.. S51529 PVRKHVERASHDIRSVITTYEGKHNHDVPAARGSGSHGLNRGANPN-NNAAMAMAIRPST 420 430 440 450 460 470 320 330 340 350 360 MOJ9.2 TTPDQLPGGDPQLLSSLRVLLSRVLATVRHASADARPWAELVD------RSAFSRPPSLS . : .. : . : : . ... ..: :. :... :.:. : .. S51529 MS---LQSNYPIPIPSTRPM--------QQGEGQA-PY-EMLQGSGGFGYSGFGNP--MN 480 490 500 510 520 370 380 390 400 410 420 MOJ9.2 EATSRVRKN-FSYFRANYITLVAILLAASLLTHPFALFLLASLAASWLFLYFFRPADQPL ..... : :: ::. S51529 AYANQIQDNAFS--RAKEEPRDDLFLDTLLA 530 540 430 440 450 460 470 480 MOJ9.2 VIGGRTFSDLETLGILCLSTVVVMFMTSVGSLLMSTLAVGIMGVAIHGAFRAPEDLFLEE 490 500 510 520 MOJ9.2 QEAIGSGLFAFFNNNASNAAAAAIATSAMSRVRV Library scan: 0:00:00 total CPU time: 0:00:01