SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MOJ9.22 (Universal genetic code) : 450 aa
 vs  library
 searching cmpmel2 library

    455 residues in     1 sequences
The best scores are:                              s-w
CMPMEL2, 455 bases, F1E checksum.                  (455) 727

>>CMPMEL2, 455 bases, F1E checksum.                  (455 aa)
Smith-Waterman score: 727;   30.022% identity in 463 aa overlap

               10        20         30        40        50         
MOJ9.2 MGSQGMSSPSPLVVKKSQVVIVKPSKATP-DVSLSLSTLDNDPYLETLAKTIYVYAPPSP
                    :.: :  .. :.. :: . . .:: .:..  :.     . .: : .:
CMPMEL         DFSFHVRKCQPELIAPANPTPYEFK-QLSDVDDQQSLRLQLPFVNIY-PHNP
                       10        20         30        40         50

      60        70        80        90       100       110         
MOJ9.2 NDHVHDPASLFQQALSDALVYYYPLAGKLHRGSHDHRLELRCSPAEGVPFVRATADCTL-
       . . .::......:.. :::.::::::.:..:   ..: ..:. .::. :..: :: .: 
CMPMEL SLEGRDPVKVIKEAIGKALVFYYPLAGRLREGP-GRKLFVECT-GEGILFIEADADVSLE
               60        70        80         90        100        

         120        130        140       150        160       170  
MOJ9.2 ---SSLNY-LKDMDTDL-YQLVPCDVAAPSGDYNPLAL-QITLFACGGLTLATALSHSLC
          ..: : :..:.... .. .  : .  :    :: : :.: . :::. ..  ..:.. 
CMPMEL EFWDTLPYSLSSMQNNIIHNALNSDEVLNS----PLLLIQVTRLKCGGFIFGLCFNHTMA
      110       120       130           140       150       160    

            180       190       200          210       220         
MOJ9.2 DGFGASQFFKTLTELAAGKTQPSIIPVWDRHRLTSNN---FSLNDQVEEGQAPKLVDFGE
       ::::  ::.:. .:.: :   :::.:::.:  ::. .   ...  . :  :   .::.  
CMPMEL DGFGIVQFMKATAEIARGAFAPSILPVWQRALLTARDPPRITFR-HYEYDQ---VVDM--
          170       180       190       200        210             

     230       240       250       260          270       280      
MOJ9.2 ACSSAATSPYTPSNDMVCEILNVTSEDITQLKEKV-AGV--VTTLEILAAHVWRARCRAL
              :   : :. . ...  .. .:. :.. . : .    ..:.:.:.::: :  ::
CMPMEL ------KSGLIPVNSKIDQLFFFSQLQISTLRQTLPAHLHDCPSFEVLTAYVWRLRTIAL
            220       230       240       250       260       270  

        290       300        310       320       330       340     
MOJ9.2 KLSPDGTSLFGMAV-GIRRIVEPPLPEGYYGNAFVKANVAMKAGELSNSPLSHVVQLIKE
       ...:.    : . : ..:  .. ::  :::::: :   :   :..: ..::...:.::..
CMPMEL QFKPEEEVRF-LCVMNLRSKIDIPL--GYYGNAVVVPAVITTAAKLCGNPLGYAVDLIRK
            280        290         300       310       320         

          350       360       370             380       390        
MOJ9.2 AK-KAAQEKRYVLEQLRETEKTLKMNVACEGGK------GAFMLLTDWRQLGLLDEIDFG
       :: ::..:  :.       ..:. . :    :.      :.::. .:  ..:. ...:::
CMPMEL AKAKATME--YI-------KSTVDLMVI--KGRPYFTVVGSFMM-SDLTRIGV-ENVDFG
     330                340         350       360        370       

      400            410        420         430       440       450
MOJ9.2 YGGSVNIIPL-----VPKYLPDICI-FLPRKQG--GVRVLVTLPKSVMVNFKEHINPLNT
       .: ..   :      . . : ..:. :. :. :  :. . . ::  .:  :. ...    
CMPMEL WGKAIFGGPTTTGARITRGLVSFCVPFMNRN-GEKGTALSLCLPPPAMERFRANVHASLQ
        380       390       400        410       420       430     

CMPMEL VKQVVDAVDSHMQTIQSASK
         440       450     

Library scan:  0:00:00  total CPU time:  0:00:01