SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MOJ9.17 (Universal genetic code) : 235 aa
 vs  library
 searching k501_actch library

    184 residues in     1 sequences
The best scores are:                              s-w
K501_ACTCH, 184 bases, 5E checksum.                (184) 172

>>K501_ACTCH, 184 bases, 5E checksum.                (184 aa)
Smith-Waterman score: 172;   28.415% identity in 183 aa overlap

               10        20        30        40        50        60
MOJ9.1 MSNVLLSPNGYVFASPKPLGRFINSKSGGRKLFFSVVRASSDDADCNAEECAPEKEVGTV
                                                           ::.:  : 
K501_A                                        MATVEVTPAVTALPENE--T-
                                                      10           

               70        80        90       100       110       120
MOJ9.1 SMEWLAGEKTKVVGTFPPRKPRGWTGYVEKDTAGQTNVYSIEPAVYVAESAISSGTAGSS
            : : ::      :..:.   . :    :    : . ::   .:  :. .    ..
K501_A -----ADEVTK------PQEPQP-EAAVAAPPAPAEPV-TEEPE-KAAPEAVEAPEEPAA
            20              30         40          50        60    

              130       140       150       160       170          
MOJ9.1 ADGAENTAAIVAGIALIAVAAASSILLQVGKDAPTRPKAVDYSGPSLSYYINKFKPS-EI
       .: :.. :          :: :   ...  ...: .: : . ..  .    .: .:. :.
K501_A TD-AKDPAE---------VAEAEEEVVEEPQEVPEEPVA-EAAAKEVEATEGKAEPTGEM
            70                 80        90        100       110   

     180       190          200       210        220        230    
MOJ9.1 VQPSTPSVTEAP--PVAELE-TSLPETPSVAQQETSLPETMA-SEAQPEAS-SVPTTSST
        . .:: .:.::  :.:  : :. ::.:.::.. :. ::. : .: .:::. . :     
K501_A -KDKTPEATDAPEAPAAAEEPTDAPEAPAVAEEPTNAPEAPAVGE-EPEAKEGKPDEAVE
            120       130       140       150        160       170 

                    
MOJ9.1 S            
                    
K501_A EASTEVPVDKTEE
             180    

Library scan:  0:00:00  total CPU time:  0:00:00