SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MOJ9.16 (Universal genetic code) : 359 aa
 vs  library
 searching fstl_arath library

    302 residues in     1 sequences
The best scores are:                              s-w
FSTL_ARATH, 302 bases, 11FA checksum.              (302) 974

>>FSTL_ARATH, 302 bases, 11FA checksum.              (302 aa)
Smith-Waterman score: 974;   47.213% identity in 305 aa overlap

               10        20        30        40        50        60
MOJ9.1 MATSSMKSIPMAIPSFSMCHKLELLKEGKTRDVPKAEEDEGLSCEFQEMLDSLPKERGWR
                                    . .::    :: :. : . ...:::::.:: 
FSTL_A                           MSSSSSVPAYLGDEDLTQETRALISSLPKEKGWL
                                         10        20        30    

               70         80        90       100       110         
MOJ9.1 TRYLYLFQGFW-CQAKEIQAIMSFQKHFQSLENDVVLATIPKSGTTWLKALTFTILNRHR
       .  .: :::.:  ::  .:.:.  ::.:.. ..:..:.: :::::::::::.:..::::.
FSTL_A VSEIYEFQGLWHTQAI-LQGILICQKRFEAKDSDIILVTNPKSGTTWLKALVFALLNRHK
           40        50         60        70        80        90   

     120       130       140       150       160       170         
MOJ9.1 FDPVASSTNHPLFTSNPHDLVPFFEYKLYANGDVPDLSGLASPRTFATHLPFGSLKETIE
       : ::.:: ::::...::: ::::.:   : . :  :.:.: ::: . ::.   :: :...
FSTL_A F-PVSSSGNHPLLVTNPHLLVPFLEGVYYESPDF-DFSSLPSPRLMNTHISHLSLPESVK
            100       110       120        130       140       150 

     180       190       200       210         220        230      
MOJ9.1 KPGVKVVYLCRNPFDTFISSWHYTNNIKSESVS--PVLLDQAFDLYCRG-VIGFGPFWEH
       . . :.:: :::: : :.: ::. ...  : ..  :.  ..: . .:.:  :: ::::.:
FSTL_A SSSCKIVYCCRNPKDMFVSLWHFGKKLAPEETADYPI--EKAVEAFCEGKFIG-GPFWDH
             160       170       180         190       200         

        240       250       260       270       280       290      
MOJ9.1 MLGYWRESLKRPEKVFFLRYEDLKDDIETNLKRLATFLELPFTEEEERKGVVKAIAELCS
       .: ::  : . :.::.:. ::.:: . :...::.: :::  : ::::    :. :..:::
FSTL_A ILEYWYASRENPNKVLFVTYEELKKQTEVEMKRIAEFLECGFIEEEE----VREIVKLCS
      210       220       230       240       250           260    

        300       310        320       330       340       350     
MOJ9.1 FENLKKLEVNKSNKSIKN-FENRFLFRKGEVSDWVNYLSPSQVERLSALVDDKLGGSGLT
       ::.:..::::: .: . : .:.. .:::::.. :                          
FSTL_A FESLSNLEVNKEGK-LPNGIETKTFFRKGEIGGWRDSFE                     
          270        280       290       300                       

           
MOJ9.1 FRLS

Library scan:  0:00:00  total CPU time:  0:00:00