SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MOJ9.15 (Universal genetic code) : 347 aa
 vs  library
 searching fstl_arath library

    302 residues in     1 sequences
The best scores are:                              s-w
FSTL_ARATH, 302 bases, 11FA checksum.              (302) 899

>>FSTL_ARATH, 302 bases, 11FA checksum.              (302 aa)
Smith-Waterman score: 899;   46.599% identity in 294 aa overlap

               10        20        30        40        50          
MOJ9.1 MAIPSFSMCHKPELLKEGKSEGQEEEGLSYEFQEMLDSLPKERGRRNRYLYLFQGF-RCQ
                            :.:.  :. : . ...:::::.:     .: :::. . :
FSTL_A           MSSSSSVPAYLGDED--LTQETRALISSLPKEKGWLVSEIYEFQGLWHTQ
                         10          20        30        40        

      60        70        80        90       100       110         
MOJ9.1 AKEIQAITSFQKHFQSLPDDVVLATIPKSGTTWLKALTFTILTRHRFDPVSSSSSDHPLL
       :  .:.:   ::.:..  .:..:.: :::::::::::.:..:.::.: :::::. .::::
FSTL_A AI-LQGILICQKRFEAKDSDIILVTNPKSGTTWLKALVFALLNRHKF-PVSSSG-NHPLL
       50         60        70        80        90        100      

     120       130       140       150       160       170         
MOJ9.1 TSNPHDLVPFFEYKLYANGNVPDLSGLASPRTFATHVPFGALKDSVENPSVKVVYLCRNP
       ..::: ::::.:   : . .  :.:.: ::: . ::.   .: .::.. : :.:: ::::
FSTL_A VTNPHLLVPFLEGVYYESPDF-DFSSLPSPRLMNTHISHLSLPESVKSSSCKIVYCCRNP
         110       120        130       140       150       160    

     180       190       200       210       220       230         
MOJ9.1 FDTFISMWHYINNITSESVSAVLLDEAFDLYCRGLLIGFGPFWEHMLGYWRESLKRPEKV
        : :.:.::. .... : ..   ...: . .:.: .:: ::::.:.: ::  : . :.::
FSTL_A KDMFVSLWHFGKKLAPEETADYPIEKAVEAFCEGKFIG-GPFWDHILEYWYASRENPNKV
          170       180       190       200        210       220   

     240       250       260       270       280       290         
MOJ9.1 LFLKYEDLKEDIETNLKKLASFLGLPFTEEEEQKGVVKAIADLCSFENLKKLEVNKSSKL
       ::. ::.::.. :...:..: ::   : :::: . .::    :::::.:..::::: .::
FSTL_A LFVTYEELKKQTEVEMKRIAEFLECGFIEEEEVREIVK----LCSFESLSNLEVNKEGKL
           230       240       250       260           270         

     300       310       320       330       340       
MOJ9.1 IQNYENRFLFRKGEVSDLVNYLSPSQVERLSALVDDKLAGSGLTFRLS
        .. :.. .:::::..                                
FSTL_A PNGIETKTFFRKGEIGGWRDSFE                         
     280       290       300                           

Library scan:  0:00:00  total CPU time:  0:00:00