SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MOJ9.12 (Universal genetic code) : 330 aa
 vs  library
 searching hbpb_arath library

    330 residues in     1 sequences
The best scores are:                              s-w
HBPB_ARATH, 330 bases, 1199 checksum.              (330)2114

>>HBPB_ARATH, 330 bases, 1199 checksum.              (330 aa)
Smith-Waterman score: 2114;   100.000% identity in 330 aa overlap

               10        20        30        40        50        60
MOJ9.1 MADTSPRTDVSTDDDTDHPDLGSEGALVNTAASDSSDRSKGKMDQKTLRRLAQNREAARK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
HBPB_A MADTSPRTDVSTDDDTDHPDLGSEGALVNTAASDSSDRSKGKMDQKTLRRLAQNREAARK
               10        20        30        40        50        60

               70        80        90       100       110       120
MOJ9.1 SRLRKKAYVQQLENSRLKLTQLEQELQRARQQGVFISGTGDQAHSTGGNGALAFDAEHSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
HBPB_A SRLRKKAYVQQLENSRLKLTQLEQELQRARQQGVFISGTGDQAHSTGGNGALAFDAEHSR
               70        80        90       100       110       120

              130       140       150       160       170       180
MOJ9.1 WLEEKNKQMNELRSALNAHAGDSELRIIVDGVMAHYEELFRIKSNAAKNDVFHLLSGMWK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
HBPB_A WLEEKNKQMNELRSALNAHAGDSELRIIVDGVMAHYEELFRIKSNAAKNDVFHLLSGMWK
              130       140       150       160       170       180

              190       200       210       220       230       240
MOJ9.1 TPAERCFLWLGGFRSSELLKLLANQLEPMTERQLMGINNLQQTSQQAEDALSQGMESLQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
HBPB_A TPAERCFLWLGGFRSSELLKLLANQLEPMTERQLMGINNLQQTSQQAEDALSQGMESLQQ
              190       200       210       220       230       240

              250       260       270       280       290       300
MOJ9.1 SLADTLSSGTLGSSSSGNVASYMGQMAMAMGKLGTLEGFIRQADNLRLQTLQQMIRVLTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
HBPB_A SLADTLSSGTLGSSSSGNVASYMGQMAMAMGKLGTLEGFIRQADNLRLQTLQQMIRVLTT
              250       260       270       280       290       300

              310       320       330
MOJ9.1 RQSARALLAIHDYFSRLRALSSLWLARPRE
       ::::::::::::::::::::::::::::::
HBPB_A RQSARALLAIHDYFSRLRALSSLWLARPRE
              310       320       330

Library scan:  0:00:00  total CPU time:  0:00:00