SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MNC6.17 (Universal genetic code) : 83 aa
 vs  library
 searching ig005i1014 library

    773 residues in     1 sequences
The best scores are:                              s-w
IG005I1014, 773 bases, 12DE checksum.              (773) 179

>>IG005I1014, 773 bases, 12DE checksum.              (773 aa)
Smith-Waterman score: 179;   41.791% identity in 67 aa overlap

               10        20        30        40        50        60
MNC6.1 MVRRKKSKQACSKGLNQRLKEDRISQFYESLLCQILNYLPTKDVVKTSVLSTRWRSLWLL
                            :. ::. . :: ..:..:::::.:.::.:: ::.:::. 
IG005I                     MDKTSQLPDELLVKVLSFLPTKDAVRTSLLSMRWKSLWMW
                                   10        20        30        40

                  70             80                                
MNC6.1 VPSLP---KGPSI-----INQFIRYSYLVMV                             
       .:.:    .  :.     . .::  : :                                
IG005I LPKLEYDFRHYSVSEGQGLARFITLSLLGHKAPAIESLSLKLRYGAIGSIKPEDIYLWVS
               50        60        70        80        90       100

IG005I LAVHDSNVRELSLKLCTFAERPTKLPKSLYKCKSIVILKLKDEILVDVPRKVCLPSLKTL
              110       120       130       140       150       160

IG005I FLGRVTYSDEDSLHRLLSNCPVLEDLVVERDRIDNLGKLSVVVKSLQRLTLKMSCPCHLD
              170       180       190       200       210       220

IG005I GIMMNTPSLKYLKVTDERQESDSDNESDSDSPRYFYDFEDMPKLEEADFVLTFQNIKKDG
              230       240       250       260       270       280

IG005I ISGLPDAMICHILSFLPTKVAASTTVLAKRWKPLLAFMPNLDFDESFRFDPRMTCEERRK
              290       300       310       320       330       340

IG005I GSESFMLVVDSVLALQAEANATLNKFYVKCEGVEQNSVLEWIPKVLKRGVLDIDLQIPSS
              350       360       370       380       390       400

IG005I RGFGSNSTFYPLPSEIFVSKTLVRLKIQFQDGANVNVEGDVSLPMLKTLHLDYVKMDTRM
              410       420       430       440       450       460

IG005I LQKLLSGCHTLEELLLMNLIWKESSEPEPCFVSVSVRTLKILKFSRFENFMKAKDFKPIV
              470       480       490       500       510       520

IG005I LLSFDIPNLVYLEYLDTIADKYEQVRFDSLVKASIGLCKTSKQIENDNNNVTKLFMGICN
              530       540       550       560       570       580

IG005I VTILYLTEDTLKVLGCCRETMPVFENLIHLTIRTGVHIGWKSLPHLLKNCPNLQTLVFEG
              590       600       610       620       630       640

IG005I MHHIYRKGRACGDVDEDGTCMCKNLDNMRVKKDIDACLSSSPVKVIKILNFGELCGFCEF
              650       660       670       680       690       700

IG005I CDVEEDVAGQIKQVKQFLETMPDLEKVILYYNTPEDEDVMKVFKKLKKLPRVASAKCEVQ
              710       720       730       740       750       760

IG005I IISDNINLSFTFR
              770   

Library scan:  0:00:00  total CPU time:  0:00:00