SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MNC6.16 (Universal genetic code) : 40 aa
 vs  library
 searching cor4_wheat library

    262 residues in     1 sequences
The best scores are:                              s-w
COR4_WHEAT, 262 bases, 20CE checksum.              (262)  68

>>COR4_WHEAT, 262 bases, 20CE checksum.              (262 aa)
Smith-Waterman score: 68;   35.714% identity in 42 aa overlap

COR4_W MEDERSTQSYQGGEAAEQVEVTDRGLLGNLLGKKKAEEDKEKEEELVTGMEKVSVEEPEV
               10        20        30        40        50        60

                                                         10        
MNC6.1                                           MIGRKKSKQDCSKGFSRR
                                                 .: ::: :    ::....
COR4_W KKEEHEDGEKKETLFSKLHRSSSSSSSSSDEEEEEVIDDNGEVIKRKK-K----KGLKEK
               70        80        90       100            110     

       20        30          40                                    
MNC6.1 LKEDTMPTHVPILG--VNTAPSPA                                    
       :.   .: :    :  :.  :.::                                    
COR4_W LQ-GKLPGHKDTEGEHVTGLPAPAAPASVQTHGGHHDTDVVVEKIDGDVKTEAAPAVPEE
          120       130       140       150       160       170    

COR4_W EKKGFLEKIKEKLPGGHKKPEDAAAVPVTHAAPAPVHAPVPAPEEVSSPDAKEKKGLLGK
          180       190       200       210       220       230    

COR4_W IMDKLPGYHKTGEEDKAAAATGEHKPSA
          240       250       260  

Library scan:  0:00:00  total CPU time:  0:00:00