SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MNC6.11 (Universal genetic code) : 324 aa
 vs  library
 searching s75444 library

    330 residues in     1 sequences
The best scores are:                              s-w
S75444, 330 bases, 1DB8 checksum.                  (330)1181

>>S75444, 330 bases, 1DB8 checksum.                  (330 aa)
Smith-Waterman score: 1181;   53.823% identity in 327 aa overlap

                      10        20        30        40        50   
MNC6.1       MGPLSVSP-MGFGTWAWGNQLLWGYQTSMDDQLQQAFELALENGINLFDTADSY
                : . : :: :::::::.:::::: .:. .:...:.  .  ::..:::.:::
S75444 MTISTTDTSLIIWPAMGCGTWAWGNKLLWGYQPAMNGELERVFRECVAAGITFFDTGDSY
               10        20        30        40        50        60

            60        70         80        90       100       110  
MNC6.1 GTGRLNGQSERLLGKFIKESQGLKG-KQNEVVVATKFAAYPWRLTSGQFVNACRASLDRL
       :::::.::::.:::.:   ::. .: .:... .:::.: ::::::   .:.:  :: .::
S75444 GTGRLQGQSEKLLGQF---SQAYEGLNQDKICLATKLAPYPWRLTPQAMVGAGMASQQRL
               70           80        90       100       110       

              120       130       140       150       160       170
MNC6.1 Q--IDQLGIGQLHWSTASYAPLQELVLWDGLVQMYEKGLVRAVGVSNYGPQQLVKIHDYL
       :  :: : . :::::::.::: ::  :  ::::. ..: ..:.:.::.::..: : .:. 
S75444 QRPID-L-V-QLHWSTANYAPWQEQPLLKGLVQLCQRGHAKALGLSNFGPKRLQKAYDFC
       120          130       140       150       160       170    

              180       190        200       210       220         
MNC6.1 KTRGVPLCSAQVQFSLLSMGK-EQLEIKSICDELGIRLISYSPLGLGMLTGKYS-SSKLP
       ...:: . : :::.::::     .: .: .:..:::.::.:::: ::.:::::. .. .:
S75444 QNEGVSIVSLQVQYSLLSTDPVSKLGLKELCEQLGIKLIAYSPLTLGLLTGKYGPQGPFP
          180       190       200       210       220       230    

      230       240       250       260       270       280        
MNC6.1 TGPRSLLFRQILPGLEPLLLALSEIAKKRGKTMPQVAINWCICKGTVPIPGIKSVRHVED
        : :.::::..:: ..::: .:. ::..: ::: :::.:::::.::.:::: :. ..:.:
S75444 PGIRGLLFRRLLPKIQPLLDTLQAIAREREKTMAQVALNWCICQGTMPIPGAKNCQQVQD
          240       250       260       270       280       290    

      290       300       310       320    
MNC6.1 NLGALGWKLTNDEQLQLEYAAKESPKSMIQNIFQTR
       :::::::.:   :. .:.  :   :..:.:::::.:
S75444 NLGALGWQLDRGEMDELNNQAAALPQTMVQNIFQSR
          300       310       320       330

Library scan:  0:00:00  total CPU time:  0:00:00