SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MNC6.10 (Universal genetic code) : 379 aa
 vs  library
 searching gyp7_yarli library

    311 residues in     1 sequences
The best scores are:                              s-w
GYP7_YARLI, 311 bases, 1328 checksum.              (311) 422

>>GYP7_YARLI, 311 bases, 1328 checksum.              (311 aa)
Smith-Waterman score: 422;   29.514% identity in 288 aa overlap

               10        20        30        40        50        60
MNC6.1 MLLKCGNGSTDNLEELPSDEANSQCVRFVDDYKITGPMTSQDVVSALNTDSSDTDSCEDN

               70        80        90       100       110          
MNC6.1 EDVLLLSSFAHSDEKKPEEDNSNNNSEENSSLLVAAASEVQVEVAVHEDFSTWQ-RIIRL
                                              :: :   ..::  :. .. :.
GYP7_Y                          KLRVDYNRLKKEWWVQ-EDKERDDF--WRDQLSRI
                                        10         20          30  

       120       130       140       150           160          170
MNC6.1 --DALRADSEWANYSPYSTAITESKARRLAESVGLKD-YDHLE---SCRL---YHAARLV
         :. :.:    : . .  :  :  :..  .  :  : ::. :   : ..    :  .:.
GYP7_Y EKDVHRTDR---NITFF--A--ECDAKK--D--GDDDNYDKDEFGFSSQINSNIHLIQLL
             40               50            60        70        80 

              180       190       200       210       220          
MNC6.1 AILEAYAMYDPEIGYCQGMSDLLSPILAVISEDHEAFWCFVGFMKKARHNF-RLDEAGIQ
        .: .: ... ..:: :::::::::. .:...:  ::: : .::.. ..:. : :..:..
GYP7_Y DMLITYNQHNKNLGYVQGMSDLLSPLYVVLQDDTLAFWAFSAFMERMERNYLR-DQSGMR
              90       100       110       120       130        140

     230       240       250       260       270       280         
MNC6.1 RQLSIVSKIIKNKDSQLYKHLENLQAEDCSFVYRMVLVMFRRELSFEQTLCLWEVMWADQ
        ::  ......    .::::::. .. .  : .::.:: :.::: ....: ::::.:.: 
GYP7_Y NQLLCLDHLVQFMLPSLYKHLEKTESTNLFFFFRMLLVWFKRELLWDDVLRLWEVLWTDY
              150       160       170       180       190       200

     290       300       310       320        330       340        
MNC6.1 AAIRAGVGKSPWSRIRQQAPPTDDLLLYAIAALVLRRK-LIIQKYSSMDEIVEECNSMAG
                     . .:      ..:..  :.. ..: ..:.. ...:::..  : .. 
GYP7_Y --------------LSSQ------FVLFVCLAILDKHKDVMIDHLAGFDEILKYMNELSM
                                  210       220       230       240

      350       360       370                                      
MNC6.1 QLNVWKLLDDAHHLVVTLHDKIETLSQSQSI                             
        ... .::  :. :   ..  .: ....                                
GYP7_Y TIDLDELLVRAELLFYRFRRTVELIDRKNEDRRNSADGSEPVSITEDLRELLSRKVIVVR
              250       260       270       280       290       300

GYP7_Y EGERPEGVMGG
              310 

Library scan:  0:00:00  total CPU time:  0:00:00