SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MNC17.11 (Universal genetic code) : 184 aa
 vs  library
 searching sp:P49199:RS8_ORYSA library

    220 residues in     1 sequences
The best scores are:                              s-w
sp|P49199|RS8_ORYSA                                (220)1076

>>sp|P49199|RS8_ORYSA                                (220 aa)
Smith-Waterman score: 1076;   85.128% identity in 195 aa overlap

               10        20        30        40        50        60
MNC17. MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR
       :::::::.::::::::::: ::::::::::::::::::::::::::.:::::::::::::
sp|P49 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR
               10        20        30        40        50        60

               70        80        90       100       110       120
MNC17. LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV
       :::::.::::::::::::::::.::::::::::::::::::::::::::::: :: ::::
sp|P49 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV
               70        80        90       100       110       120

                        130        140       150       160         
MNC17. DIGRKKK---------GE-A-VTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLL
       :::::::         :. : .::::.:::::: :::: ::.::.::.:.::::.:::::
sp|P49 DIGRKKKEPPHPRGCCGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLL
              130       140       150       160       170       180

     170       180                             
MNC17. ACIASRPGQCGRADG                         
       :::.:::::::::::                         
sp|P49 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGASA
              190       200       210       220

Library scan:  0:00:00  total CPU time:  0:00:00