SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MNC17.10 (Universal genetic code) : 413 aa
 vs  library
 searching sp:P49598:P2C2_ARATH library

    399 residues in     1 sequences
The best scores are:                              s-w
pir||S55457                                        (399)1382

>>pir||S55457                                        (399 aa)
Smith-Waterman score: 1382;   56.931% identity in 404 aa overlap

               10        20        30        40         50         
MNC17. MAEICYENETMMIETTATVVKKATTTTRRRERSSSQAARRRRMEIR-RFKFV--SGEQEP
                                       :.:.:. :::...   .:.:  :.   :
pir||S              MAGICCGVVGETEPAAPVDSTSRASLRRRLDLLPSIKIVADSAVAPP
                            10        20        30        40       

        60        70                80          90       100       
MNC17. VFVDGDLQRRRRRESTVAAST--------STVFYET--AKEVVVLCESLSSTVVALPDPE
       .  . . ..:..:: ::. ::        :.:  :.  :. .:.  .:.. .   . :  
pir||S L--E-NCRKRQKRE-TVVLSTLPGNLDLDSNVRSENKKARSAVTNSNSVTEAESFFSD--
           50         60        70        80        90       100   

       110       120       130        140       150       160      
MNC17. AYPKYGVASVCGRRREMEDAVAVHP-FFSRHQTEYSSTGFHYCGVYDGHGCSHVAMKCRE
         :: :..:::::::.:::::..:: :..:.     : . :. ::.::::::::: ::::
pir||S -VPKIGTTSVCGRRRDMEDAVSIHPSFLQRN-----SENHHFYGVFDGHGCSHVAEKCRE
              110       120       130            140       150     

        170       180         190           200            210     
MNC17. RLHELVREEFEADA-D-WEKSMARSFTRMDMEV----VALNADGAAK-----CRCELQRP
       :::..:..: :. : : : ..:..:: .:: ::      : ..::..     :::::: :
pir||S RLHDIVKKEVEVMASDEWTETMVKSFQKMDKEVSQRECNLVVNGATRSMKNSCRCELQSP
         160       170       180       190       200       210     

         220       230       240       250       260       270     
MNC17. DCDAVGSTAVVSVLTPEKIIVANCGDSRAVLCRNGKAIALSSDHKPDRPDELDRIQAAGG
       .::::::::::::.:::::::.::::::::::::: :: :: :::::::::: ::: :::
pir||S QCDAVGSTAVVSVVTPEKIIVSNCGDSRAVLCRNGVAIPLSVDHKPDRPDELIRIQQAGG
         220       230       240       250       260       270     

         280       290       300       310       320       330     
MNC17. RVIYWDGPRVLGVLAMSRAIGDNYLKPYVISRPEVTVTDRANGDDFLILASDGLWDVVSN
       ::::::: ::::::::::::::::::::::  ::::::::.. :. :::::::::::: :
pir||S RVIYWDGARVLGVLAMSRAIGDNYLKPYVIPDPEVTVTDRTDEDECLILASDGLWDVVPN
         280       290       300       310       320       330     

         340       350       360       370       380       390     
MNC17. ETACSVVRMCLRGKVNGQVSSSPEREMTGVGAGNVVVGGGDLPDKACEEASLLLTRLALA
       ::::.:.:::::                :.:::.     .:   .:: .:.::::.::::
pir||S ETACGVARMCLR----------------GAGAGD----DSDAAHNACSDAALLLTKLALA
         340                       350           360       370     

         400       410         
MNC17. RQSSDNVSVVVVDLRRDT      
       :::::::::::::::.        
pir||S RQSSDNVSVVVVDLRKRRNNQASS
         380       390         

Library scan:  0:00:00  total CPU time:  0:00:00