SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MNA5.9 (Universal genetic code) : 308 aa
 vs  library
 searching crcycd library

    372 residues in     1 sequences
The best scores are:                              s-w
CRCYCD, 372 bases, 1E checksum.                    (372) 927

>>CRCYCD, 372 bases, 1E checksum.                    (372 aa)
Smith-Waterman score: 927;   48.525% identity in 305 aa overlap

                                              10        20         
MNA5.9                                MAEENLELSLLCTESNVDDEGMI----VD
                                                     : ::  .:    . 
CRCYCD MAPSFDLLCAEDNSSIFDEVDDNYYGVVDDDVLQICNLQQQHGNLRNFDDFTLILLIIIK
               10        20        30        40        50        60

          30        40        50        60        70        80     
MNA5.9 ETPIEISIPQMGFSQSESEEIIMEMVEKEKQHLPSDDYIKRLRSGDLDLNVGRRD-ALNW
       :  .:  :   ::  . ..: .  . ..:.::. . ::.::.:.:::::  : :. ...:
CRCYCD EHNFEALIS--GFFVA-NHECLASLFDNERQHFLGLDYLKRFRNGDLDL--GARNLVIDW
                 70         80        90       100         110     

           90        100       110       120       130       140   
MNA5.9 IWKACEVH-QFGPLCFCLAMNYLDRFLSVHDLPSGKGWILQLLAVACLSLAAKIEETEVP
       : :. . : .:::::  :..::::::::...:: ::.:..:::.:::::::::..::.::
CRCYCD IHKV-QSHYNFGPLCVYLSVNYLDRFLSAYELP-GKAWMMQLLGVACLSLAAKVDETDVP
          120       130       140        150       160       170   

           150       160       170       180       190       200   
MNA5.9 MLIDLQVGDPQFVFEAKSVQRMELLVLNKLKWRLRAITPCSYIRYFLRKMSKCDQEPSNT
       ...::::.. .::::::..::::::::. ::::....:: :.: ::: :.:  :. ::..
CRCYCD LILDLQVSESKFVFEAKTIQRMELLVLSTLKWRMQSVTPFSFIDYFLYKLSG-DKMPSKS
           180       190       200       210       220        230  

           210       220       230       240       250       260   
MNA5.9 LISRSLQVIASTTKGIDFLEFRPSEVAAAVALSVSGELQRVHFDNSSFSPLFSLLQKERV
       :: ...:.: :: ::::..::::::.:::::.::. . : :.: ...:: : . ..:::.
CRCYCD LIFQAIQLILSTIKGIDLMEFRPSEIAAAVAISVTQQTQIVEFTDKAFSFLTDHVEKERL
            240       250       260       270       280       290  

           270                  280       290       300            
MNA5.9 KKIGEMIE-------SDGSDLCS----QTPNGVLEVSACCFSFKTHDSSSSYTHLS    
        :  :...       :.:. : :    :.: :::..::: .:.:. :.:..         
CRCYCD MKCVEIMHDLRMSSRSNGA-LASTSVPQSPIGVLDASAC-LSYKSDDTSTTPSGSCGNSA
            300       310        320       330        340       350

CRCYCD HSSPASAPPPKRRKLDRTSQIS
              360       370  

Library scan:  0:00:00  total CPU time:  0:00:00