SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MNA5.13 (Universal genetic code) : 518 aa
 vs  library
 searching psu81288 library

    406 residues in     1 sequences
The best scores are:                              s-w
PSU81288, 406 bases, 18FE checksum.                (406)2071

>>PSU81288, 406 bases, 18FE checksum.                (406 aa)
Smith-Waterman score: 2071;   75.871% identity in 402 aa overlap

               10        20        30        40        50        60
MNA5.1 MNPYDAKDRRWILSMFFFVVLFCNNVSTSSSSSEVITIKPRHLSLLKSALQRVKLDDFIK

               70        80            90       100       110      
MNA5.1 VSLSISFRFQKSSGEQSDLWRPLTD-QGWS---PCIDLGNSPSLPDKTAGYVQVFLDGGL
                               : .: :    : .: :.:.::.:. ::.::::::::
PSU812                        MDASGKSRLETCNELRNKPTLPEKSEGYIQVFLDGGL
                                      10        20        30       

        120       130       140       150       160       170      
MNA5.1 NQQRMGICDAVAVAKILNATLVIPYLEVNPVWQDSSSFVDIFDVDHFIDSLKDDIRVVRE
       ::::::   ::.:::::::::::::::.::::.::::: : .::::::: ::::. .:.:
PSU812 NQQRMGYVIAVVVAKILNATLVIPYLELNPVWKDSSSFEDYIDVDHFIDVLKDDVTIVKE
        40        50        60        70        80        90       

        180       190       200       210       220       230      
MNA5.1 LPDEYSWSTREYYGTAVRETRVKTAPVHASANWYIENVSPVLQSYGIAAISPFSHRLSFD
       ::.::.::.::::  :.:.::.:.:::::.::::.::: ::::::::::::::::::.::
PSU812 LPEEYAWSSREYYTLAIRDTRIKAAPVHATANWYLENVLPVLQSYGIAAISPFSHRLTFD
       100       110       120       130       140       150       

        240       250       260       270       280       290      
MNA5.1 HLPAEIQRLRCKVNFQALRFVPHITSLGDALVSRLRNPSWRSNKEQKNVDHLGDMTNPHR
       .:: .::.:::::::::: ::::: .:::::.::::::. .:. :. . ..: ..:.   
PSU812 NLPMDIQHLRCKVNFQALVFVPHIRTLGDALISRLRNPQ-HSTDEMGS-NYLQEVTDADD
       160       170       180       190        200        210     

        300       310       320       330       340       350      
MNA5.1 RQEPGKFAVLHLRFDKDMAAHSACDFGGGKAEKLSLAKYRQMIWQGRVLNSQFTDEELRS
        .. :::.::::::::::::::::::::::::::.::::::.::::::::::::::::::
PSU812 SKNAGKFVVLHLRFDKDMAAHSACDFGGGKAEKLALAKYRQVIWQGRVLNSQFTDEELRS
         220       230       240       250       260       270     

        360       370       380       390       400       410      
MNA5.1 QGRCPLTPEEMGLLLAAFGFDNNTRLYLASHKVYGGEARISTLRQVFPRMEDKRSLASSE
       :::::.::::.::::::.::::.::::::::::::: :::.::.:.:: ::::.::.:  
PSU812 QGRCPMTPEEVGLLLAALGFDNSTRLYLASHKVYGGGARIATLKQLFPLMEDKKSLTSPF
         280       290       300       310       320       330     

        420       430       440       450       460       470      
MNA5.1 ERARIKGKASLLAALDYYVSMHSDIFISASPGNMHNALVGHRTFENLKTIRPNMALIGQL
       :::.::::::::::::::.:.::::::::::::::::::::::. :::::::::::.:::
PSU812 ERAQIKGKASLLAALDYYISIHSDIFISASPGNMHNALVGHRTYLNLKTIRPNMALMGQL
         340       350       360       370       380       390     

        480       490       500       510        
MNA5.1 FLNKSITWVDFQQALGEGHVNRQGQIRLRKPKQSIYTYPAPD
       ::::..                                    
PSU812 FLNKTMGVVRV                               
         400                                     

Library scan:  0:00:00  total CPU time:  0:00:01