SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MMN10.19 (Universal genetic code) : 241 aa
 vs  library
 searching atac00233211 library

    440 residues in     1 sequences
The best scores are:                              s-w
ATAC00233211, 440 bases, 2042 checksum.            (440) 410

>>ATAC00233211, 440 bases, 2042 checksum.            (440 aa)
Smith-Waterman score: 410;   32.441% identity in 299 aa overlap

ATAC00 MHLISLVLSSTNIDNKQTLDLIKTPKSLECLDVEKQNQNILQILNIDDITSPLSAQIFDF
               10        20        30        40        50        60

ATAC00 CDPQLFQETFNQSSEVTSTSNILEKSGSFHSNTNTTTTTENSNNNNNNKNTNLQDDEDDN
               70        80        90       100       110       120

                                                10        20       
MMN10.                                  MCGHVSTSITSGDNCPCFLYSD--DIV
                                           :. :.: : :.   : .:.  ...
ATAC00 NNTDLSIIFDSQEDFENDITASIDFSSSSLQYPVIDHLLTAI-SQDQ---FDFSSGLQVI
              130       140       150       160           170      

           30               40        50        60        70       
MMN10. -APPQLL---DHHH----HQFPPPPLALLMMSQNSLYAAEAVSGFGYFDSGMNGGGGSSS
         ::..    :        .. ::::      :....  . .:.   .. :.:      :
ATAC00 HQPPNISYSGDPLSLSAISSLAPPPL------QSGVFEEDCLSSVPSYNLGLN-----PS
        180       190       200             210       220          

           80           90       100         110                   
MMN10. CD---S---PSSMGSGGESLVMQRSVSSHNGF-SGN-YTAA-----HDFVND---DDG--
       :.   :   :. :..:   :.   :. :. :.  :: ....     :: . :   :.:  
ATAC00 CSFFRSSGLPAYMSTG---LL---SAESNLGYLPGNIHVGSEINKPHDPLMDFQADNGGF
         230       240             250       260       270         

       120         130           140            150            160 
MMN10. --P--VRRALSAGDLPRS----SRRESSTVWSESN-AI----IEGM--S---KAYKYSPE
         :  ..: ..  :: ..    .. .:  :  ... :.    :.:.  :   :. : :::
ATAC00 FCPDSIKRMFNPEDLQKALGGGAENQSHLVTPQAHPALGPVDINGLEDSTLNKVGKLSPE
     280       290       300       310       320       330         

             170       180       190       200       210           
MMN10. EKKEKIEKYRSKRNLRNFNKRIKYECRKTLADSRPRIRGRFARNDEISQ---Q-------
       ..::::..: .::: :::::.::: :::::::::::.:::::.:::...   :       
ATAC00 QRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDEFGEPNRQAFSSHHD
     340       350       360       370       380       390         

                   220         230       240    
MMN10. -EQVDVM-----EAVVGDVDTWA--SFLDSFSANHFLN   
        :. : :     : .: . : .:  :  .::. :.      
ATAC00 DEDEDDMGVKDEEQLVDSSDIFAHISGANSFKCNYPIQSWI
     400       410       420       430       440

Library scan:  0:00:00  total CPU time:  0:00:00