SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MMN10.15 (Universal genetic code) : 111 aa
 vs  library
 searching af047002 library

    233 residues in     1 sequences
The best scores are:                              s-w
AF047002, 233 bases, 203C checksum.                (233) 317

>>AF047002, 233 bases, 203C checksum.                (233 aa)
Smith-Waterman score: 317;   47.059% identity in 119 aa overlap

AF0470 GRRGRGRAGSRAGRRGGAQAAARVNRGGGPIRNRPAIARGAAGGGGRNRPAPYSRPKQLP
               10        20        30        40        50        60

AF0470 DKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGR
               70        80        90       100       110       120

                 10        20        30        40        50        
MMN10.   GTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPANGNSNGGQ
         :::.: . :..::: :.:.::   :::.::.:..: :. :  :  . :::.. . ::.
AF0470 SLGTANVHFERKADALKAMKQYNGFPLDGRPMNIQLV-TS-QIDA--QRRPAQSVNRGGM
              130       140       150         160         170      

       60         70               80        90       100       110
MMN10. GRGGQQRG-GGRGGGG---RG--GG--GRGRRPGKGPAEKISAEDLDADLDKYHSGDMET
        :.   :: :: ::::   ::  ::  ::::  :..  ...:::.:::.:: :..  :.:
AF0470 TRN---RGAGGFGGGGGTRRGTRGGARGRGRGAGRNSKQQLSAEELDAQLDAYNA-RMDT
           180       190       200       210       220        230  

        
MMN10. N
       .
AF0470 S
        

Library scan:  0:00:00  total CPU time:  0:00:00