SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MMN10.11 (Universal genetic code) : 710 aa
 vs  library
 searching ig002n014 library

    589 residues in     1 sequences
The best scores are:                              s-w
IG002N014, 589 bases, 11DE checksum.               (589)3602

>>IG002N014, 589 bases, 11DE checksum.               (589 aa)
Smith-Waterman score: 3602;   80.565% identity in 602 aa overlap

               10        20        30        40        50        60
MMN10. MATEAVDLPIHEHPLFPSARCIDDECDGCHVNGFMYAGYFCNEPYCYVWFHKDCAEAPGE
       ::: ::.::::::::.::::::  :::::::::.:: :::::::.:..::::.:::::.:
IG002N MATTAVNLPIHEHPLYPSARCIIGECDGCHVNGYMYNGYFCNEPFCFIWFHKECAEAPAE
               10        20        30        40        50        60

               70        80        90       100       110       120
MMN10. ISHSSHPEHPLLLTNDSKDGPCDLCGQKLLTPCYSCPTCEFKVDLTCGMKPSPPAIEHPL
       :::::: .::::::::: :::::::::::: ::::: ::::::::::.::::::::::::
IG002N ISHSSHHQHPLLLTNDSIDGPCDLCGQKLLPPCYSCSTCEFKVDLTCAMKPSPPAIEHPL
               70        80        90       100       110       120

              130       140       150       160       170       180
MMN10. CHDHAVVFLKIREEKVPCELCKESIEGPSYSCLECDMYFHVNCVHLSEEVNHPCHSIHPL
       :: :..:::: ::::: :::::.:: ::::::::::.::::::..::.:::::::: :::
IG002N CHHHSLVFLKKREEKVSCELCKDSIAGPSYSCLECDVYFHVNCIQLSKEVNHPCHSAHPL
              130       140       150       160       170       180

              190       200       210       220       230       240
MMN10. KLITSESLTDDAEKSCLLCGNIPAENMLYHCSVCNFTSCLGCTKNPPLLVIEHMKTHKHP
       :::  :::::::: .:::::. :::::::::::::::::::::::::::::::.::::::
IG002N KLIPFESLTDDAETTCLLCGKKPAENMLYHCSVCNFTSCLGCTKNPPLLVIEHIKTHKHP
              190       200       210       220       230       240

              250       260       270       280       290       300
MMN10. LTLLPRRISCICDVCGKKCQFTAYVCLQCDFVTARKCIDRPRVININRHDHRIYLTHHLG
       : :.:::: ::::.:::::.:..::: :::::::: :::  :::::::::::::::::::
IG002N LILFPRRIPCICDICGKKCEFAVYVCPQCDFVTARGCIDLARVININRHDHRIYLTHHLG
              250       260       270       280       290       300

              310       320       330       340       350       360
MMN10. TGYSECGVCHKNVSQYKGAYSCSVCPNYAVHSTCAVRTDVWDGVELEGTTEITEDISPFK
       ::::.:::::.::.::::::::::::.:::::::::::::::::::::::::::: ::::
IG002N TGYSKCGVCHENVNQYKGAYSCSVCPHYAVHSTCAVRTDVWDGVELEGTTEITEDNSPFK
              310       320       330       340       350       360

              370       380        390       400       410         
MMN10. VVGDNLICHFSHEEHQLKLHKEDV-IHDERRRCEACIHPVQFGSIYVCEEEECCFVLHEK
       ::::::::::::::: :...:.:: ::::..:: :::::. ::::: ::   : :.::::
IG002N VVGDNLICHFSHEEHPLRFQKDDVFIHDEHKRCAACIHPLGFGSIYCCET--CPFILHEK
              370       380       390       400       410          

     420       430       440       450       460       470         
MMN10. CANLPMKKRLVFGTRPYTLMKETTEITHCELCGILSDGFAYSSHEWSDVDVHCGSLNEPL
       ::::::::::::::::::::::::..: : ::::.::::::::. : :::::::::::::
IG002N CANLPMKKRLVFGTRPYTLMKETTQLTDCTLCGIFSDGFAYSSR-WLDVDVHCGSLNEPL
      420       430       440       450       460        470       

     480       490       500       510       520       530         
MMN10. VHDGHIHPLYFAKKEEHTCDGCQKSIEDYMLRCKACDFDLCLYCATLPEKIWHRNDGHPL
       ::::::::: : : : : ::::.:.:.:::::::::::::::::::::.:::::::::::
IG002N VHDGHIHPLNFDKMEGHFCDGCKKNIDDYMLRCKACDFDLCLYCATLPKKIWHRNDGHPL
       480       490       500       510       520       530       

     540       550       560       570       580       590         
MMN10. TLCCGEKEEASGKYWCDICEKELDPSIWFYTCYDCGVTLHAQCVLGDFSRLVLG--QIYS
       :::: :::::: :::::::::::::      :    .: .:.  :     :: :  :...
IG002N TLCCEEKEEASDKYWCDICEKELDP-----MCIRRFLTSRARTKL-----LVWGKSQVWG
       540       550       560            570            580       

       600       610       620       630       640       650       
MMN10. FGEKEIEFEAVPNNINTRPFCIQCNSRCKVSVILKILKDSEDGSDDGSDDVSDDVSDDPS
        :                                                          
IG002N -GS                                                         
                                                                   

       660       670       680       690       700       710
MMN10. NDVSDDTSDDDSDVVSDVVSDDASNDDSDDTSDDHNGYICSRSCLSSYLGEEI

Library scan:  0:00:00  total CPU time:  0:00:00