SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MKM21.P1 (Universal genetic code) : 482 aa
 vs  library
 searching f21m126 library

    607 residues in     1 sequences
The best scores are:                              s-w
F21M126, 607 bases, 259F checksum.                 (607) 894

>>F21M126, 607 bases, 259F checksum.                 (607 aa)
Smith-Waterman score: 894;   36.458% identity in 384 aa overlap

F21M12 MFRIEILRCTLSQSHPQRFSRASFLLSTWYSQESVSAADNDDDPVLVKLSVAIRDSYKDP
               10        20        30        40        50        60

F21M12 PLEFSSFTDCPSIRKVLPSLSVHHVVDLINHNPLSLPQRSIFAFFKFISSQPGFRFTVET
               70        80        90       100       110       120

F21M12 YFVLARFLAVHEMFTEAQSLIELVVSRKGKNSASSVFISLVEMRVTPMCGFLVDALMITY
              130       140       150       160       170       180

                                                                   
MKM21.                                                   MALKGLEP-N
                                                             :. : :
F21M12 TDLGFIPDAIQCFRLSRKHRFDVPIRGCGNLLDRMMKLNPTGTIWGFYMEILDAGF-PLN
              190       200       210       220       230          

      10        20        30        40          50        60       
MKM21. LISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDE--VTYNTLIKGYCKEGNFHQALVM
       .  .:...: .:.:: ..... :. :...:  ::.   :..::::.:::: ::. ... .
F21M12 VYVFNILMNKFCKEGNISDAQKVFDEITKR--SLQPTVVSFNTLINGYCKVGNLDEGFRL
     240       250       260         270       280       290       

         70        80        90       100       110       120      
MKM21. -HAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFS
        : .: .    :.:.::..::...:: ..:. :  ..:.:  ::: ::.  .:::. : :
F21M12 KH-QMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHS
        300       310       320       330       340       350      

           130       140       150       160       170       180   
MKM21. QKG---YMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSP
       ..:    :.:.:.   .: ..:..:..: ::.:.:: : .: .  :  ... : ..:: :
F21M12 RNGEIDLMKESYQ---KMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRP
        360          370       380       390       400       410   

           190       200       210       220       230       240   
MKM21. DVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLY
       : ..:.:...::::. ::. ::....:: ..::. : . .:.:. :.:.. :. .:    
F21M12 DKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERAL
           420       430       440       450       460       470   

           250       260       270       280       290       300   
MKM21. EEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQ
       .::::.:. ::. ::: ...:.: .:: . ...: .::   : .:.::::.::.::: : 
F21M12 REMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKL
           480       490       500       510       520       530   

           310       320       330               340       350     
MKM21. SRTREAKRLLLKLFYEESVPSDVTYHTLIE------NCSN--IEFKSVVSLIKGFC-MKG
       .. ..:  ::  ..    ::.:.::.::.:      : :.  :. :  ....  .  .:.
F21M12 GQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHANSSKRYIQ-KPEIGIVADLASYKS
           540       550       560       570        580       590  

          360       370       380       390       400       410    
MKM21. MMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVI
       ...: :..  :   :.:.                                          
F21M12 IVNELDRA--S---KDHRNR                                        
            600                                                    

          420       430       440       450       460       470    
MKM21. ALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKD

          480  
MKM21. GFLPNGIS

Library scan:  0:00:00  total CPU time:  0:00:00