SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MKD10.P2 (Universal genetic code) : 81 aa
 vs  library
 searching pma2_arath library

    947 residues in     1 sequences
The best scores are:                              s-w
PMA2_ARATH, 947 bases, 236B checksum.              (947) 305

>>PMA2_ARATH, 947 bases, 236B checksum.              (947 aa)
Smith-Waterman score: 305;   61.364% identity in 88 aa overlap

PMA2_A SSLEDIKNETVDLEKIPIEEVFQQLKCSREGLTTQEGEDRIQIFGPNKLEEKKESKLLKF
               10        20        30        40        50        60

PMA2_A LGFMWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFIEENNAGNAA
               70        80        90       100       110       120

PMA2_A AALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSAL
              130       140       150       160       170       180

PMA2_A TGESLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLT
              190       200       210       220       230       240

PMA2_A AIGNFCICSIAIGMVIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGS
              250       260       270       280       290       300

PMA2_A HRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLF
              310       320       330       340       350       360

PMA2_A AAMASRVENQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRV
              370       380       390       400       410       420

                                                     10         20 
MKD10.                                       QARAGIREVHFKTKESLGA-WC
                                              ::  . :   ::::: :: : 
PMA2_A SKGAPEQILELAKASNDLSKKVLSIIDKYAERGLRSLAVARQVVPE---KTKESPGAPWE
              430       440       450       460          470       

              30            40        50           60        70    
MKD10. NIWFVGLLP----PRHESTETIGRALTLGVNIKMITGE---VGQITSCKLGMGINMYPSS
          ::::::    :::.:.::: :::.::::.:::::.   .:. :. .:::: ::::::
PMA2_A ---FVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSS
          480       490       500       510       520       530    

           80                                                      
MKD10. AFLGTHK                                                     
       :.:::::                                                     
PMA2_A ALLGTHKDANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPA
          540       550       560       570       580       590    

PMA2_A LKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIR
          600       610       620       630       640       650    

PMA2_A IVFGFMLIALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGVV
          660       670       680       690       700       710    

PMA2_A LGGYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHELMGAVYLQVSIISQALIFVTRSR
          720       730       740       750       760       770    

PMA2_A SWSFVERPGALLMIAFLIAQLIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPLD
          780       790       800       810       820       830    

PMA2_A VFKFAIRYILSGKAWLNLFENKTAFTMKKDYGKEEREAQWALAQRTLHGLQPKEAVNIFP
          840       850       860       870       880       890    

PMA2_A EKGSYRELSEIAEQAKRRAEIARLRELHTLKGHVESVVKLKGLDIETPSHYTV
          900       910       920       930       940       

Library scan:  0:00:00  total CPU time:  0:00:00