SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MJE4.P6 (Universal genetic code) : 232 aa
 vs  library
 searching ac0001031 library

   1048 residues in     1 sequences
The best scores are:                              s-w
AC0001031, 1048 bases, 432 checksum.               (1048) 722

>>AC0001031, 1048 bases, 432 checksum.               (1048 aa)
Smith-Waterman score: 722;   45.415% identity in 229 aa overlap

AC0001 METMHSRDDLVDIQSWLEYDQVYTVEPVGKCGGLALLWKSSVQVDLKFVDKNLMDAQVQF
               10        20        30        40        50        60

AC0001 GAVNFCVSCVYGDPDRSKRSQAWERISRIGVGRRDKWCMFGDFNDILHNGEKNGGPRRSD
               70        80        90       100       110       120

AC0001 LDCKAFNEMIKGCDLVEMPAHGNGFTWAGRRGDHWIQCRLDRAFGNKEWFCFFPVSNQTF
              130       140       150       160       170       180

AC0001 LDFRGSDHRPVLIKLMSSQDSYRGQFRFDKRFLFKEDVKEAIIRTWSRGKHGTNISVADR
              190       200       210       220       230       240

AC0001 LRACRKSLSSWKKQNNLNSLDKINQLEAALEKEQSLVWPIFQRVSVLKKDLAKAYREEEA
              250       260       270       280       290       300

AC0001 YWKQKSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFG
              310       320       330       340       350       360

AC0001 NLFKSSNPSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSAL
              370       380       390       400       410       420

AC0001 FFQHYWSTVGNQVTSEVKKFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLY
              430       440       450       460       470       480

AC0001 KIISKIMAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVK
              490       500       510       520       530       540

AC0001 SDMSKAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLR
              550       560       570       580       590       600

AC0001 QGDPLSPFLFVLCTEGLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASRE
              610       620       630       640       650       660

                          10        20        30        40         
MJE4.P            SLFNLVILINFSKSSVMFGSKVHPQKKANIKRILGIHQEGGMGTY-GLL
                          ::..:::. :: ::  : :..:.  :::  ::: ::: :: 
AC0001 QSLVLQKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGL-
              670       680       690       700       710          

       50          60        70        80        90       100      
MJE4.P AKSY-GPKA-VFAFVQDRLKNRINTWSSKLLSKGGKEVLIKSVAQAFPMYVMSSFLLPKN
        . . : :. .. ...::::.....: .. ::.::::::.:::: :.:...:: : :: .
AC0001 PECFSGSKVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPIT
     720       730       740       750       760       770         

        110       120        130       140       150       160     
MJE4.P ICSKLNSEISNLWSNN-QESRGLHWVVWDKFCFPQSKGGLGFRRLEEFNLALLAKQLWRL
        : .:.: ....: .. ..:: .::  :...:.:...:::::: .. :: :::::: :::
AC0001 TCENLESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRL
     780       790       800       810       820       830         

         170       180        190       200       210       220    
MJE4.P MKYPNSLVARVLRGMYFCYSSPLL-VKPSYLPSYGWRNKLAARPLLLSSLRKNIGSGFDT
       ...:. :..:.:.. ::  .. .: .  :  ::.:::. : .: :: ..:.: .:.: . 
AC0001 LHFPDCLLSRLLKSRYF-DATDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGDGASL
     840       850        860       870       880       890        

          230                                                      
MJE4.P RVWSDPWI                                                    
        :: ::::                                                    
AC0001 FVWIDPWIDDNGFRAPWRKNLIYDVTLKVKALLNPRTGFWDEEVLHDLFLPEDILRIKAI
      900       910       920       930       940       950        

AC0001 KPVISQADFFVWKLNKSGDFSVKSAYWLAYQTKSQNLRSEVSMQPSTLGLKTQVWNLQTD
      960       970       980       990      1000      1010        

AC0001 PKIKIFLWKVLSGILPVAENLNGRGMSLIP
     1020      1030      1040        

Library scan:  0:00:00  total CPU time:  0:00:00