SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MJE4.P5 (Universal genetic code) : 409 aa
 vs  library
 searching ecops2 library

    424 residues in     1 sequences
The best scores are:                              s-w
ECOPS2, 424 bases, D9A checksum.                   (424)2741

>>ECOPS2, 424 bases, D9A checksum.                   (424 aa)
Smith-Waterman score: 2741;   99.267% identity in 409 aa overlap

                              10        20        30        40     
MJE4.P                MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQ
                      :::::::::::::::::::::::::::::::::::::::::::::
ECOPS2 MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQ
               10        20        30        40        50        60

          50        60        70        80        90       100     
MJE4.P LFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
ECOPS2 LFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGR
               70        80        90       100       110       120

         110       120       130       140       150       160     
MJE4.P AKKWIAHAPLLARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIH
       ::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
ECOPS2 AKKWIAHAPLIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIH
              130       140       150       160       170       180

         170       180       190       200       210       220     
MJE4.P HVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
ECOPS2 HVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHT
              190       200       210       220       230       240

         230       240       250       260       270       280     
MJE4.P GRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
ECOPS2 GRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVML
              250       260       270       280       290       300

         290       300       310       320       330       340     
MJE4.P GAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
ECOPS2 GAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFV
              310       320       330       340       350       360

         350       360       370       380       390       400     
MJE4.P KTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNR
       :::::::::::::::::::::::::::::::::::::::::::::::::. :::::::::
ECOPS2 KTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRHGACNGLSDNR
              370       380       390       400       410       420

           
MJE4.P CLEI
       ::::
ECOPS2 CLEI
           

Library scan:  0:00:00  total CPU time:  0:00:01