SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MJE4.P4 (Universal genetic code) : 449 aa
 vs  library
 searching tra1_maize library

    806 residues in     1 sequences
The best scores are:                              s-w
TRA1_MAIZE, 806 bases, 151F checksum.              (806) 579

>>TRA1_MAIZE, 806 bases, 151F checksum.              (806 aa)
Smith-Waterman score: 579;   27.422% identity in 547 aa overlap

TRA1_M TPPVGNNPPSGSAIRLAKLMSTTRAPSTRKTNSVFSAYAQGLKRKAEASSSRIQNVRARA
               10        20        30        40        50        60

TRA1_M RGHGCGRTSPSSSTAEAERHFIQSVSSSNANGTATDPSQDDMAIVHEPQPQPQPQPEPQP
               70        80        90       100       110       120

TRA1_M QPQPEPEEEAPQKRAKKCTSDVWQHFTKKEIEVEVDGKKYVQVWGHCNFPNCKAKYRAEG
              130       140       150       160       170       180

TRA1_M HHGTSGFRNHLRTSHSLVKGQLCLKSEKDHGKDINLIEPYKYDEVVSLKKLHLAIIMHEY
              190       200       210       220       230       240

                                       10        20        30      
MJE4.P                         SRRKARREIVETYVSKKAAMKKIIENNRQRLSLTTD
                               ::  ::. :.. :. .:  .   ... ..:.: : :
TRA1_M PFNIVEHEYFVEFVKSLRPHFPIKSRVTARKYIMDLYLEEKEKLYGKLKDVQSRFSTTMD
              250       260       270       280       290       300

          40        50        60        70                         
MJE4.P IWV-CPNTAASYMVITAHFVDAYWQLRKMIIGFKHVCDVKT----------I---WN---
       .:. : :   ::: .: :..:  : :.: :.:: ::   .:          :   ::   
TRA1_M MWTSCQNK--SYMCVTIHWIDDDWCLQKRIVGFFHVEGRHTGQRLSQTFTAIMVKWNIEK
                310       320       330       340       350        

      80         90        100             110                  120
MJE4.P STY-LMLDQALKFRLAFEKM-EA-EDKPYN---D--YFAEK----------EDGNKRI-G
       . . : ::.:   ..: . . :  .:   :   :  .:  .          .::   : :
TRA1_M KLFALSLDNASANEVAVHDIIEDLQDTDSNLVCDGAFFHVRCACHILNLVAKDGLAVIAG
      360       370       380       390       400       410        

                                   130                       140   
MJE4.P P-----AVT---KD----WE---------NVDR---L---VQ--------ILE--IFYKS
             :..   :.    ::         ..:.   .   :.        .:.  ..:: 
TRA1_M TIEKIKAIVLAVKSSPLQWEELMKCASECDLDKSKGISYDVSTRWNSTYLMLRDALYYKP
      420       430       440       450       460       470        

            150                           160          170         
MJE4.P TLV-LSASN---Y--V---ASH------------KLYN--EIVSIT-INLGALTYDDDG-
       .:. :..:.   :  .   : .            :...  :..: :  . . : :   : 
TRA1_M ALIRLKTSDPRRYDAICPKAEEWKMALTLFKCLKKFFDLTELLSGTQYSTANLFYK--GF
      480       490       500       510       520       530        

        180       190            200        210            220     
MJE4.P --LKDKAEAMLAKLAKY--RD---AFGEKVE-FNRLVIVA-SV--F-DPR-KKMKFAELC
         .::  .   ..  :.  :    :..:: : . ..  .: .:  : ::: ::. . :. 
TRA1_M CEIKDLIDQWCVH-EKFVIRRMAVAMSEKFEKYWKVSNIALAVACFLDPRYKKI-LIEFY
        540        550       560       570       580        590    

         230       240       250       260       270       280     
MJE4.P FERLYGQGSTKATQLQDSVYNILSDLFDEYTRNNLLNKSSTGTTGSSTQSEWSQDQVV--
       .....:. : :. ...: :  ..  :.. :.  .     :.  : ..:..  :.:...  
TRA1_M MKKFHGD-SYKV-HVDDFVR-VIRKLYQFYSSCS----PSAPKTKTTTND--SMDDTLME
          600         610        620           630         640     

           290       300       310       320       330       340   
MJE4.P NEDSERPVLRNGFLYENMKYEFDEIVKETGLHNTANEVDRYLKEPVEKPIILKGTEYDLL
       :::.:   ..: .:.: .: ..:..  :.      ::.:.:..::. :    .: ..:.:
TRA1_M NEDDE---FQN-YLHE-LK-DYDQV--ES------NELDKYMSEPLLKH---SG-QFDIL
         650             660               670       680           

           350       360       370       380       390       400   
MJE4.P NFWRINNGKYPVLSLIAKDILAMQVTFVASESAFSTSGRVVNPFRSCLSHYMVEVLMCLE
       ..::   ..::.:. ::.:.::.::. ::::::::..::::.:.:. :.  .::.:.: .
TRA1_M SWWRGRVAEYPILTQIARDVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTK
       690       700       710       720       730       740       

           410       420       430       440                       
MJE4.P QWLKCEIHLNERGVSTIKQLLSEITLEDHLMRSKFRFSSLFLVITS              
       .:    .  ...:.. .  ..... . : ..                             
TRA1_M DW----VAASRKGATYFPTMIGDLEVLDSVIAAATNHENHMDEDEDAIEFSKNNEDVASG
           750       760       770       780       790       800   

TRA1_M SSP
          

Library scan:  0:00:00  total CPU time:  0:00:01