SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MJE4.P3 (Universal genetic code) : 138 aa
 vs  library
 searching tm021b048 library

    716 residues in     1 sequences
The best scores are:                              s-w
TM021B048, 716 bases, 5F1 checksum.                (716) 541

>>TM021B048, 716 bases, 5F1 checksum.                (716 aa)
Smith-Waterman score: 541;   57.246% identity in 138 aa overlap

TM021B MLVEKICKKIGIDETSRKVKLSYILCTSQRETSIVDDDDFLGYLTVVNAKGIRPALNVEV
               10        20        30        40        50        60

TM021B VNKESERVEQNSRVERRSSVGINYEELNAFDVENGGVVTIFRGEDAGGNCVNAEPIIEEA
               70        80        90       100       110       120

TM021B NSVEEAIENADSRVFEEAMENVVIEDREHVDSRMDVAEDNGVDGRIEYYELPCVGEGSQS
              130       140       150       160       170       180

TM021B SEKSQSVTEWEDGTEIELHQEFVSKEAVQDLVNRAANKYCFATTTIASDPQRLMLRCRQS
              190       200       210       220       230       240

                                                                   
MJE4.P                                                           LY
                                                                 : 
TM021B KTTGCRWKMHTCKRSDKNSGNCKHTGTPRLIASILYEDYREWVCIARMLPHGEGKDNTLV
              250       260       270       280       290       300

             10        20        30        40        50        60  
MJE4.P MLKKVNESRITYLKLDESDKFLFLFIALRASIEGFQVMRKVIIVDTTHFKNGYGGVLVFA
       :  .:: . :.:...: ..:: .::.:: : ::::.:::::.:::.: .:. :::.::::
TM021B MCVEVNPGTISYVEVDAQQKFKYLFVALGACIEGFKVMRKVVIVDATFLKTVYGGMLVFA
              310       320       330       340       350       360

             70        80        90       100       110       120  
MJE4.P LAQDPNRHHYIIAVGILDNENDASWRLFFEKLLSDVPDTPELVFLSDRNSSLIKDIHNGY
        :::::.:.:::: ...: ::::::  ::.:: . .::.: :::.:::..:.::.: . .
TM021B TAQDPNHHNYIIASAVIDRENDASWSWFFNKLKTVIPDVPGLVFVSDRHQSIIKSIMQVF
              370       380       390       400       410       420

            130                                                    
MJE4.P SAAHHRYCIWHLSQNV                                            
         :.: .:.:::::::                                            
TM021B PNARHGHCVWHLSQNVKVRVKTEKEEAAANFIACAHVYTQFEFTREYARFRRRFPNVGPY
              430       440       450       460       470       480

TM021B LDRWAPVENWAMCYFEGDRYNIDTSNACESLNSTFERARKYFLLPLLDAIIEKISEWFNK
              490       500       510       520       530       540

TM021B HRKESVKYSKTRGLVPVVENEIHSLCPIAKTMPVTELNSFERQYSVIGEGEERSDDPSKY
              550       560       570       580       590       600

TM021B DGDFGVPQICFCGKQLELVERLIGDQKKTFLKCPMSGQDDNYHVDKGWDLAVHEQCFCID
              610       620       630       640       650       660

TM021B KRFGEHRELIQNAFKFGGDSNRLQINQIHAEIEDLKHRLDKKDAEIARLMDALGKK
              670       680       690       700       710      

Library scan:  0:00:00  total CPU time:  0:00:00