SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MJE4.P2 (Universal genetic code) : 810 aa
 vs  library
 searching s23818 library

    752 residues in     1 sequences
The best scores are:                              s-w
S23818, 752 bases, 9CA checksum.                   (752)1857

>>S23818, 752 bases, 9CA checksum.                   (752 aa)
Smith-Waterman score: 1857;   38.645% identity in 797 aa overlap

               10          20         30        40        50       
MJE4.P MAGNDNNGGSGGFYRD--WMYK-RFDEVTGNLSAEYVAGVEKFMTFSNSHPIVQSSRGKF
                   :  :  ::.: :. :       ::  :...:. :. .. .  .  ::.
S23818          MYSFTMDKSWMHKSRLTE-------EYENGLDQFLDFAFDN-VCLN--GKI
                        10               20        30           40 

        60        70         80        90       100       110      
MJE4.P HCPCSVCNNEKHIISGRRVSS-HLFSQGFMSDYYVWYKHGKELNMDIRTSYTNRTYFSEN
        :::. :.:   .   :.... ::. .::.. :  :  :: : . .   : .:     .:
S23818 ICPCKQCKNA--LWMDRETAKEHLIIDGFIKGYTHWVIHG-EGSSN---SQNN----IQN
              50          60        70         80               90 

        120       130       140       150       160        170     
MJE4.P YEEVGNVVEDPYVDMVNDAFNFNVGFDDNYHQDGSYQNVEEAVSNHSNK-FYDLLEGANN
        :.. :. :: . ..:.:::. .   ::: ...    : ::   :.  : :: ::. :..
S23818 -ERL-NTFEDMH-NLVHDAFGVE---DDNINSE-EEPN-EEEEPNEEAKTFYKLLDDAQQ
               100        110           120        130       140   

         180       190       200       210       220        230    
MJE4.P PLYDSYREGQSQLSFASRLMHNKAEYNMSEKSVDSVCEMFTDFLPDG-NQATTSHYQTKK
        :: . ..  :.: :  ::.: :   . :.:.   . :.. . .:.  :.   :.:...:
S23818 ELYPGCKDF-SRLRFIVRLFHLKCLGKWSNKTFTMLLELLKEAFPEQTNSLPKSYYEVQK
           150        160       170       180       190       200  

          240       250          260          270         280      
MJE4.P LMPNLGLPYHTIDVCKNNCMLFWKE---DEK-KM-NVD-FVAHKD--VSLMTNRRRTK-V
       ..  :::    ::.: :.:::. ::   :.  .. :.. ..  ..  ::  ..  . : :
S23818 IIGALGLTCVKIDACPNDCMLYRKEHANDDACHVCNTSRYIEGENNSVSEEASSSKCKRV
            210       220       230       240       250       260  

         290       300       310       320       330       340     
MJE4.P PYSRMWYLPIGNRLKRMYQSHKIAATMRWDVEHQSKEGEMNHPSDAAEWRYFQELHSRFA
       : . . :.:.  ::.:.. : : :. :::  :...:.:.. ::::.  :. :.. :  ::
S23818 PAKVLRYFPLKPRLQRLFTSSKTASFMRWHKEERTKDGQLRHPSDSPLWHAFDHQHPDFA
            270       280       290       300       310       320  

         350       360        370       380       390       400    
MJE4.P EESRNVYLGLCTYGFNP-SGMSSNHSLWPMILTPYNLPPGMCMNTVYLFLRVLNSGPNHP
       :. ::. ::: . ::::   ::  :: ::.::::::.:: :::.  ..:: .:  ::. :
S23818 EDPRNIRLGLAADGFNPFRTMSVAHSTWPVILTPYNIPPWMCMKEPFFFLTLLIPGPSPP
            330       340       350       360       370       380  

          410       420       430       440       450       460    
MJE4.P RTSLDVFLQPLIEELKELSTGVDAYDVLLSQKFNLKAVLLWTISNFSAYSMLSRWTTHGK
        ...::..:::::::.::  ::..::.  ...::..:.:::::... ::. :: :.:.:.
S23818 GNNIDVYMQPLIEELQELWGGVNTYDASAKENFNVRAALLWTINDYPAYANLSGWSTKGE
            390       400       410       420       430       440  

          470       480       490       500       510          520 
MJE4.P LSCPVCMESTKSFYLPNGRKTCFDCHRRFFPHGHPSRRNRKDFLKGREPSSEY---PLES
       :.:: : ..: : :: ...: :.  ::::. . :: :.. :.:  : :   ::   :. .
S23818 LACPSCHKDTCSKYLQKSHKYCYMGHRRFLNRYHPYRKDTKSF-DGNE---EYRRAPI-A
            450       460       470       480           490        

             530       540        550       560        570         
MJE4.P LTEEQVYYERLASVNPPKMKDVGGN-DHEKKMRSYGKEHNWHKENIL-ELSYWKD-LNLG
       :: ..:  :.... :   .:  : . : .  .       ::.:..:. .: :::: : : 
S23818 LTGDMVS-EEITGFN---IK-FGKKVDDNPTL-----PLNWKKRSIFFDLPYWKDSL-LR
       500        510           520            530       540       

      580       590       600       610       620          630     
MJE4.P HNIDVMHIEKNFLDNIMNTLMSVKGKSKDNIMSRLDIENFCSWPDLH---IDSKGKAPIP
       ::.::::::::  ..:..::....:..::.  ::::....    .::   ..: ::  .:
S23818 HNFDVMHIEKNVCESIIGTLLNLEGRTKDHENSRLDLKDMGIRSELHPISLES-GKHYLP
        550       560       570       580       590        600     

           640       650       660       670       680       690   
MJE4.P A--YTLTEEAKKILFQCVKYEVKFSDGYSSELASCVDLENEKFSGMKSHDCHVFMERLLP
       :  :..... :.:.:. .:  ::  :::.:...  :.:. .:.::.:::: :..:..:::
S23818 AACYSMSKKEKEIVFEILK-TVKVPDGYASNISRRVQLKPNKISGLKSHDHHILMQQLLP
         610       620        630       640       650       660    

           700       710       720        730       740       750  
MJE4.P FIFAELLDRNVHLALSGIEAFFRDLCSRTLK-KSRVQILKEKIVLIICTVEKDFSTIIFD
       . . ..: ..:.  :  . .:::.:::..:. .. :.. :. :.  .: .:: :   .::
S23818 IALRKVLPKHVRTPLIKLCTFFRELCSKVLNPQDLVRMGKD-IAKTLCDLEKIFPPSFFD
          670       680       690       700        710       720   

             760       770       780       790       800       810
MJE4.P VM-YLPIQLPYEAEMGGPVQYKWMYPFERFSKSKEKQRTKDMRHDQLLSHIPMTRLLIF
       .: .:::.: :::...:::::.::::.::                              
S23818 IMMHLPIHLAYEAQIAGPVQYRWMYPIER                              
           730       740       750                                

Library scan:  0:00:00  total CPU time:  0:00:03