SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MJE4.P1 (Universal genetic code) : 96 aa
 vs  library
 searching strnaaah library

    616 residues in     1 sequences
The best scores are:                              s-w
STRNAAAH, 616 bases, 10D9 checksum.                (616) 407

>>STRNAAAH, 616 bases, 10D9 checksum.                (616 aa)
Smith-Waterman score: 407;   52.113% identity in 142 aa overlap

STRNAA EFYGGGMSGLSLADRATIANMAPEYGATMGFFPVDHVTLEYLKLTGRSDEIVGMVEAYLR
               10        20        30        40        50        60

                                                   10        20    
MJE4.P                                     RPHDSVPLKEMKADWHSCLDTKVR
                                           :::: :::::::.:::. ::.:: 
STRNAA ANNMFVDYNEPQQEKVYSSYLNLDLADVEPCLSGPKRPHDRVPLKEMKSDWHALLDNKVG
               70        80        90       100       110       120

                          30        40        50        60         
MJE4.P FK---------------SFNGKPVELNYDSVVIVTLTSCTNTSNPSFMLGASLVAKK---
       ::               ::.:.:.::.. ::::...:::::::::: ::::.:::::   
STRNAA FKGFAVPKEVQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAALVAKKASE
              130       140       150       160       170       180

                                     70        80        90        
MJE4.P ----------------------------LQKYLNKQGFNIVGYGCTTYIGNYGEIDES  
                                   ::::::.:::::::::::: ::: :..:::  
STRNAA LGLHVKPWVKTSLAPGSGVVTKYLLKSGLQKYLNQQGFNIVGYGCTTCIGNSGDLDESVA
              190       200       210       220       230       240

STRNAA SAISENDIVAAAVLSGNRNFEGRVHALTRANYLASPPLVVAYALAGTVDIDFEKDPIGVG
              250       260       270       280       290       300

STRNAA KDGKDVYFRDIWPSTEEIAEVVQSSVLPDMFKSTYEAITKGNTMWNELSVPTTKLYQWDP
              310       320       330       340       350       360

STRNAA KSTYIHEPPYFKGMTMDPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAARYLME
              370       380       390       400       410       420

STRNAA RGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTVHVPSGEKLSVFDAAM
              430       440       450       460       470       480

STRNAA KYKSAGQSTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIVPLC
              490       500       510       520       530       540

STRNAA FKAGEDADTLGLTGQERYTIDLPENISEIRPGQDVTVQTDTGKSFTCIVRFDTEVELAYF
              550       560       570       580       590       600

STRNAA NHGGILQYVIRQLTQR
              610      

Library scan:  0:00:00  total CPU time:  0:00:00