SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MIK19.20 (Universal genetic code) : 238 aa
 vs  library
 searching gmu22103 library

    640 residues in     1 sequences
The best scores are:                              s-w
GMU22103, 640 bases, 1650 checksum.                (640) 297

>>GMU22103, 640 bases, 1650 checksum.                (640 aa)
Smith-Waterman score: 297;   29.688% identity in 256 aa overlap

GMU221 MNMEKEGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPT
               10        20        30        40        50        60

                             10        20        30        40      
MIK19.               MARMERCEWLSLIQSGLSTEIFSWIAYATSSKEAWEILMVRSVG-G
                              :. . .:.. .::  :   : .:.::::: .   : .
GMU221 DGLKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTS
               70        80        90       100       110       120

          50         60        70        80           90        100
MIK19. PIFQAR-KLLDLKKEYNNTTMSDAETVHEFTGKLLELVFRMKSC---GWKV-EEKILVKK
        . ..: .::  :  ..:  :.. : .:.:  ..::..   ..:   : .. .:: ::.:
GMU221 KVKMSRLQLLATK--FENLKMKEEECIHDFHMNILEIA---NACTALGERMTDEK-LVRK
              130         140       150          160       170     

              110            120       130         140       150   
MIK19. ILSSLPPRFD-KVL-VEVAE---KLSVNVIIDCLLVHEYNM--RPDQESFQESVIQSVNV
       :: ::: ::: ::  .: :.   .: :. .:  : . : ..  : ...: . . . : : 
GMU221 ILRSLPKRFDMKVTAIEEAQDICNLRVDELIGSLQTFELGLSDRTEKKSKNLAFV-S-N-
          180       190       200       210       220        230   

           160          170       180        190            200    
MIK19. EESFEAEAEILYSLN-D--ITQSQVAMMERQ-SEVLSLVQKNQK-----MLMQMQKQMMM
       .:. : : :  :.:. :  .:.. :... .: ..::. ... ::     . ....:    
GMU221 DEG-E-EDE--YDLDTDEGLTNA-VVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSE-
                 240       250        260       270       280      

           210       220           230                             
MIK19. LMQQK-DHVLAHSESYE----EEMTKVIESMEKHYLKKK                     
        .:.. :.  .::....    : . ..      : :::.                     
GMU221 -YQKRSDEKPSHSKGFQCHGCEGYGHIKAECPTH-LKKQRKGLSVCRSDDTESEQESDSD
          290       300       310        320       330       340   

GMU221 RDVNALTGRFESAEDSSDTDSEITFDELATSYRELCIKSEKILQQEAQLKKVIANLEAEK
           350       360       370       380       390       400   

GMU221 EAHEEEISELKGEVGFLNSKLENMTKSIKMLNKGSDMLDEVLQLGKNVGNQRGLGFNHKS
           410       420       430       440       450       460   

GMU221 AGRITMTEFVPAKISTGATMSQHRSRHHGTQQKKSKRKKWRCHYCGKYGHIKPFCYHLHG
           470       480       490       500       510       520   

GMU221 HPHHGTQSSSSRRKMMWVPKHKIVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVNI
           530       540       550       560       570       580   

GMU221 EPCSTSYVTFGDGSKGKITGMGKLVHDGLRYVKEXDRAAQCTRQDKMSNEELKLQDP
           590       600       610       620       630       640

Library scan:  0:00:00  total CPU time:  0:00:00