SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MIK19.19 (Universal genetic code) : 710 aa
 vs  library
 searching apka_arath library

    410 residues in     1 sequences
The best scores are:                              s-w
APKA_ARATH, 410 bases, B4A checksum.               (410) 870

>>APKA_ARATH, 410 bases, B4A checksum.               (410 aa)
Smith-Waterman score: 870;   40.483% identity in 373 aa overlap

               10        20        30        40        50        60
MIK19. MVAVRASKEIPKAALLWTLTHVVQPGDRIRLLVVVPSNYTSKKIWGFSRFTSDCASGYGR

               70        80        90       100       110       120
MIK19. FLAGTNSDRKDDIHESCSQMMFQLHNVYDAEKINVRIKIVFASLDGVIAAEAKKSNSNWV

              130       140       150       160       170       180
MIK19. ILDRGLKYEKKCCIEQLECNLVVIKKSQPKVLRLNLVKNADTEHPEAISRLASKSVESRR

              190       200       210       220       230       240
MIK19. SSRTGKKLREPFVTPASSPDQEVSSHTDIGTSSISSSDAGASPFLASRVFEGLKKENLWV

              250       260       270       280       290       300
MIK19. NDGSKSFFESDSDSDGEKWSPLSMASSSSHPVTTADLLSPSGDLSKAHTETPRKSRFAVL
                                                                   
APKA_A                                                            M
                                                                   

               310       320           330       340       350     
MIK19. RLALSRK-EPEAGKEIRKPDSCLNKSV----REVVSLSRKPAPGPPPLCTICQHKAPKFG
        . :: . . :..    : :.   :..     .. :.: .:.:       : :  .:.. 
APKA_A GICLSAQVKAESSGASTKYDA---KDIGSLGSKASSVSVRPSPRTEG--EILQ--SPNLK
              10        20           30        40            50    

         360       370       380       390                 400     
MIK19. NPPRWFTYSELETATKGFSKGSFLAEGGFGSVHLG-----TL----PD-GQIIAVKQYKI
       .    :...::..::..:   : :.::::: :  :     .:    :  : .::::. . 
APKA_A S----FSFAELKSATRNFRPDSVLGEGGFGCVFKGWIDEKSLTASRPGTGLVIAVKKLNQ
               60        70        80        90       100       110

         410       420       430       440       450       460     
MIK19. ASTQGDREFCSEVEVLSCAQHRNVVMLIGLCVEDGKRLLVYEYICNGSLHSHLYDIKVSI
        . :: .:. .::. :.  .::..: ::: :.:: .::::::..  :::..::.  .   
APKA_A DGWQGHQEWLAEVNYLGQFSHRHLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFR-R---
              120       130       140       150       160          

         470       480       490        500       510       520    
MIK19. GMGREPLGWSARQKIAVGAARGLRYLHE-ECRVGCIVHRDMRPNNILLTHDFEPLVGDFG
       :.  .::.:. : :.:.:::.:: .::  : ::   ..::.. .::::  ...  ..:::
APKA_A GLYFQPLSWKLRLKVALGAAKGLAFLHSSETRV---IYRDFKTSNILLDSEYNAKLSDFG
        170       180       190          200       210       220   

          530        540       550       560       570       580   
MIK19. LARWQPEGDKG-VETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELITGRKAMDIK
       ::.  : :::. : :::.:: :: ::::  .:..: :.:::::::::.::..::.:.: .
APKA_A LAKDGPIGDKSHVSTRVMGTHGYAAPEYLATGHLTTKSDVYSFGVVLLELLSGRRAVDKN
           230       240       250       260       270       280   

           590        600       610       620        630       640 
MIK19. RPKGQQCLTEWARP-LLQKQAINELLDPRLMNCYCEQEVYC-MALCAYLCIRRDPNSRPR
       ::.:.. :.:::.: :..:. : ...: ::.. :  .:. : .:  .  :.  . . :: 
APKA_A RPSGERNLVEWAKPYLVNKRKIFRVIDNRLQDQYSMEEA-CKVATLSLRCLTTEIKLRPN
           290       300       310       320        330       340  

             650       660       670       680       690       700 
MIK19. MSQVCSHLKNTYKLITYNRNFLSVNISFCLWNLCLLIEGVADVRRRRCHESNIEEASQGK
       ::.: :::..  .:                                              
APKA_A MSEVVSHLEHIQSLNAAIGGNMDKTDRRMRRRSDSVVSKKVNAGFARQTAVGSTVVAYPR
            350       360       370       380       390       400  

             710
MIK19. FFLGSLYTI
                
APKA_A PSASPLYV 
            410 

Library scan:  0:00:00  total CPU time:  0:00:01