SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MIK19.15 (Universal genetic code) : 456 aa
 vs  library
 searching af030424 library

    419 residues in     1 sequences
The best scores are:                              s-w
AF030424, 419 bases, 71 checksum.                  (419) 495

>>AF030424, 419 bases, 71 checksum.                  (419 aa)
Smith-Waterman score: 495;   28.222% identity in 450 aa overlap

               10        20        30        40        50        60
MIK19. MVQKQQASAGPGTEPKKRRRVGFSPADTGVEANECIKIYLVSSKEEVDSSDISSVKPVDL
                                :.   ..:  :.. ::   :.... :: .  :   
AF0304    MAGFGAMEKFLVEYKSAVEKKLAEYKCNTNTAIELKLVRFPEDLEN-DIRTFFPEYT
                  10        20        30        40         50      

               70         80        90        100        110       
MIK19. NDFFDGDGKI-YGYQGLKGDKGITDLKSALQNIF-AETIVDTK-DEFLQTFSTQRDF---
       ...: :: .  .::.:::    .  . ..:...: .:    .: :: ..   .. :    
AF0304 HQLF-GDDETAFGYKGLK--ILLYYIAGSLSTMFRVE--YASKVDENFDCVEAD-DVEGK
         60         70          80        90         100        110

          120       130          140       150               160   
MIK19. IRNMVSNGEVMHAGATDGSS---KNAEVVPSDPQLQIELIKVDYP--------QVIRMEI
       ::...  :  . ....:  :   :...  :    :.    .:  :        :. . ..
AF0304 IRQIIPPG--FCTNTNDFLSLLEKEVDFKPFGTLLHT--YSVLSPTGGENFTFQIYKADM
                120       130       140         150       160      

           170         180       190       200       210        220
MIK19. GSPNAGLL-YS-RLVPLVLLFVDGSNPIDVTDPDWHLYLLIQKKEEKEDP-LYRIVGFTA
            :.  :  ::  ... :.. .. ::: :  :: :.:. .: .:.   :.  ::. .
AF0304 --TCRGFREYHERLQTFLMWFIETASFIDVDDERWH-YFLVFEKYNKDGATLFATVGYMT
          170       180       190       200        210       220   

              230       240        250       260         270       
MIK19. IYKFYRYPDRLRMRLSQILVL-PSFQGKGLGSYLMEVVNNVAITE--NVYDLTVEEPSEK
       .:..: :::. : :.::.:.: : :::.: :. :.:.:.    ::  .: :.:.:.::..
AF0304 VYNYYVYPDKTRPRVSQMLILTP-FQGQGHGAQLLETVHRY-YTEFPTVLDITAEDPSKS
           230       240        250       260        270       280 

       280       290       300       310       320       330       
MIK19. FQHIRTCIDINRLRSFDPIKPDIDSAVQTLTKGKLSKKAQIPRFTPPLNAIEKVRESLKI
       .  ..       ::.:  .:  .    : :    .:..  .  :.  . ::: .....::
AF0304 Y--VK-------LRDFVLVK--L---CQDLPC--FSREKLMQGFNEDM-AIE-AQQKFKI
                      290              300       310         320   

       340       350       360       370       380         390     
MIK19. NKKQFLKCWEILIYLALDPIDKYMEDYTSVITNHVRTDILGKDIETP--KKQVVDVPSSF
       ::..  . .:::  :. :  :   :.: :      : ::  . : .:  :::  :.    
AF0304 NKQHARRVYEILRLLVTDMSDA--EQYRSY-----RLDIKRRLI-SPYKKKQR-DL----
           330       340         350            360         370    

         400       410       420        430       440       450    
MIK19. EPEASFVVFKSVNGEEANTNVQVDENKPD-QEQQLKQLVEERIREIKLVAEKVSKSGQTL
          :.  . : .  ::  :: :... . . :..::..  .: ... . : :....     
AF0304 ---AK--MRKCLRPEEL-TN-QMNQIEISMQHEQLEESFQELVEDYRRVIERLAQE    
                   380         390       400       410             

         
MIK19. KV

Library scan:  0:00:00  total CPU time:  0:00:01