SSEARCH searches a sequence database using the Smith-Waterman algorithm version 2.0u54, July. 1996 Please cite: T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; W.R. Pearson (1991) Genomics 11:635-650 >MIK19.14 (Universal genetic code) : 956 aa vs library searching pqql_ecoli library 931 residues in 1 sequences The best scores are: s-w PQQL_ECOLI, 931 bases, CC6 checksum. (931)1067 >>PQQL_ECOLI, 931 bases, CC6 checksum. (931 aa) Smith-Waterman score: 1067; 27.900% identity in 1000 aa overlap 10 20 30 40 50 MIK19. MDLIAGESSKVLRKQGFRSLKLM-SVDMEQEL-GNELEPFGADY----GRLDNGLIYYVR ..:. : : :. .. . .: . : : : :.::::: :.. PQQL_E MEIIMRNLCFL-LTLVATLLLPGRLIAAAL-P--QDEKLITGQLDNGLRYMIY 10 20 30 40 60 70 80 90 100 110 MIK19. RNSKPRMRAALALAVKVGSVLEEEDQR-GVAHIVEHLAFSATTRYTNHDIVKFLESIGAE ...:. .. : : ...:: :.:::.. ::::.:::. :..: . .. ... .::.: . PQQL_E PHAHPKDQVNLWLQIHTGS-LQEEDNELGVAHFVEHMMFNGTKTWPGNKVIETFESMGLR 50 60 70 80 90 100 120 130 140 150 160 170 MIK19. FGPCQNAMTTADETIYELFVPVDKPELLSQAISILAEFSSEIRVSKEDLEKERGAVMEEY :: ::.:. :::.:.. .:. . . :.:...:..:.:. : ... :::.. ::. PQQL_E FGRDVNAYTSYDETVYQVSLPTTQKQNLQQVMAIFSEWSNAATFEKLEVDAERGVITEEW 110 120 130 140 150 160 180 190 200 210 220 230 MIK19. RGNRNATGRMQDSHWQLMMEGSKYAERLPIGLEKVIRSV-PAATVKQFYQKWYHLCNMAV :....: : .... ... ... .: :::: .. .: :: ..::::.::. ::. PQQL_E RAHQDAKWRTSQARRPFLLANTRNLDREPIGLMDTVATVTPAQ-LRQFYQRWYQPNNMTF 170 180 190 200 210 220 240 250 260 270 280 290 MIK19. VAVGDFPDTKTVVDLIKTHFEDKRSSSEPPQIPVFPVPSHEETRFSCFVESEAAGSAVMI ..:::. :.: .. ::: .. .: ... . :.:. .... ::. . ..: ... . PQQL_E IVVGDI-DSKEALALIKDNL-SKLPANKAAENRVWPTKAENHLRFNIINDKENRVNGIAL 230 240 250 260 270 280 300 310 320 330 MIK19. SYKMPVSDLKTVKDYRDML--AE-SMFLHALNQRL--------FK-IS----RR-KDPP- :..:. .. :.: .... :: ::... .:::: .: :: : : : PQQL_E YYRLPM--VQ-VNDEQSFIEQAEWSMLVQLFNQRLQERIQSGELKTISGGTARSVKIAPD 290 300 310 320 330 340 340 350 360 370 MIK19. ----FFACSV-------AADVLVAR---VRLHGFSEREISVVRALMMSEIESAY---LER :: .. ::..:.:. . :::: .:.. :.. .. ...: :: PQQL_E YQSLFFRVNARDDNMQDAANALMAELATIDQHGFSAEELDDVKSTRLTWLKNAVDQQAER 350 360 370 380 390 400 380 390 400 410 420 430 MIK19. DQVQSTSLRDEYIQHFLHKEPVIGIEYEAQLQKTLLPQISASDVSRYSEKLRTSCGCVIK : . :: : . :.. : .. : ::.: : ::....... ..:: . . PQQL_E DLRMLTS-R--LASSSLNNTPFLSPEETYQLSKRLWQQITVQSLAEKWQQLRKNQDAFWE 410 420 430 440 450 440 450 460 470 480 MIK19. SM-EPKSAATIDHMRNVVSK--VNSLEEE---KMIAPW--DEENIPEEIVSEKPTPGDIT .: . . :: ....: . .::.: : .: . .:. . .. : ..:. PQQL_E QMVNNEVAA-----KKALSPAAILALEKEYANKKLAAYVFPGRNLSLTVDAD-PQ-AEIS 460 470 480 490 500 510 490 500 510 520 530 540 MIK19. HQLEYPEVGVTELTLSNGMQVCY-KSTDFLDDQVL-FTGFSY-GGLSELP--ESDYISCS . : ..: :::::: .: ::. ..: : . . : : :: .: ... :. . PQQL_E SKETLAE-NLTSLTLSNGARVILAKSAG--EEQKLQIIAVSNKGDLS-FPAQQKSLIALA 520 530 540 550 560 550 560 570 580 MIK19. M----GSTIAGEIGMFGYK-----PSVLMD-----M--LADL-------ETALQLVYQLF :: . ::.. . : :: :. : : .. : ..::. : . PQQL_E NKAVSGSGV-GELSSSSLKRWSAENSVTMSSKVSGMNTLLSVSARTNNPEPGFQLINQRI 570 580 590 600 610 620 590 600 610 620 630 MIK19. TTNVMPQEEEVGIVMQMAE-ESVRARERDPYTVFANRVKELNYGN--SYFFRPIRISELR : ... .... .: :. ..... .. : ::... : :.. . ... .:... PQQL_E THSTI--NDNIWASLQNAQIQALKTLDQRPAEKFAQQMYETRYADDRTKLLQENQIAQFT 630 640 650 660 670 680 640 650 660 670 680 690 MIK19. KVDPLKACEYFNSCFRDPSTFTVVIVGNL--DPTIALPLILQYLGGIPKPPQPVLNFNRD .: : : . . : .:. .: :::::. : .:: : .:::.: . .: : PQQL_E AADALAADRQL---FSSPADITFVIVGNVAEDKLVAL--ITRYLGSIKHSDSP-LA---- 690 700 710 720 730 700 710 720 730 740 MIK19. DLKGLPFTFPT---KIT-KEFVRSPMVEAQCSVQLC-F----PVQLTNGTMIEEIHCIGF : :.: : ..: :: :. :: : : . ::.: . : . .. PQQL_E --AGKPLTRATDNASVTVKE-QNEPV--AQVS-QWKRYDSRTPVNLPT-RMALDAFNVA- 740 750 760 770 780 750 760 770 780 790 800 MIK19. LGKLLETKIIQFLRFEH--GQIYSAEVSVFLGGNKPSRTADLRGDIS--VNFSCDPEISS :.: :...: : :. : :: :: :. . :. : . ::: . :.:.:: . PQQL_E LAKDLRVNI----R-EQASGA-YS--VSSRLSVD-PQ--A--K-DISHLLAFTCQPERHD 790 800 810 820 830 810 820 830 840 850 860 MIK19. KLVDLALEEIV-RLQKEGPSQEDISAILEIEQRAHENGMQENYYWL-DRIIRGYQSRVYA .:. :: : .: :: : : :..... . ::. . .:.. : . :. .: . PQQL_E ELLTLANEVMVKRLAK-GISEQELNEYQQNVQRSLDI-QQRSVQQLANTIV---NSLIQY 840 850 860 870 880 870 880 890 900 910 920 MIK19. GDLGASCKILEEGRLRMRESLAPQTAQAALQRILPHPCKKQYTAVILMPQRSRFGFLSSI : .: :. .: ... .. .....:... : :: . ::.: :.:. PQQL_E DDPAA---WTEQEQL-LKQ-MTVENVNTAVKQYLSHPVNT-YTGV-LLPK 890 900 910 920 930 930 940 950 MIK19. FSSRSEGPYIRDTKILAGIAGLGVVVFGIWRYSRK Library scan: 0:00:01 total CPU time: 0:00:05