SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MIK19.13 (Universal genetic code) : 339 aa
 vs  library
 searching af020272 library

    332 residues in     1 sequences
The best scores are:                              s-w
AF020272, 332 bases, 19D0 checksum.                (332)1703

>>AF020272, 332 bases, 19D0 checksum.                (332 aa)
Smith-Waterman score: 1703;   73.795% identity in 332 aa overlap

               10        20        30        40        50        60
MIK19. MCNLLNIEKDPIRVLITGAAGNIGYAIAPMIARGIMLGPDQPMILHLLDIEPASSSLEAV
             . :::.:::.:::::.::::..::::::.:::::::.:::.::: ::. ::..:
AF0202       MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIAPAAESLNGV
                     10        20        30        40        50    

               70        80        90       100       110       120
MIK19. KMELQDSAFPLLKGVIATTNVVEACKDVNIVIMIGGFPRIAGMERKDVMSKNVVIYKAQA
       :::: :.::::::::.:::.:::::  :::..:.:::::  :::::::::::: :::.::
AF0202 KMELVDAAFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA
           60        70        80        90       100       110    

              130       140       150       160       170       180
MIK19. SALERYASDDCKVLVVANPANTNALILKEFAPSIPEENITCLTRLDHNRALAQLADKLSV
       ::::..:. .::::::::::::::::::::::::::.::.:::::::::::.:....:.:
AF0202 SALEKHAAANCKVLVVANPANTNALILKEFAPSIPERNISCLTRLDHNRALGQISERLNV
          120       130       140       150       160       170    

              190       200       210       220       230       240
MIK19. PVSSVKNVIVWGNHSSTQYPDTNHATVSTKTGDRPLKELVTDHNWLKNEFIVEVQQRGAA
        ::.:::::.:::::::::::.:::::.: .:..:...::.:  ::..:::  :::::::
AF0202 QVSDVKNVIIWGNHSSTQYPDVNHATVNTPAGEKPVRQLVSDDAWLNGEFISTVQQRGAA
          180       190       200       210       220       230    

              250       260       270       280       290       300
MIK19. VLRARKQSSAFSAAGAACDHIRDWFLGTPKGTWVSMGVCSDGSYGIPPGLVYSFPVICEK
       ...::: :::.:::.::::::::: ::::.::.::::: :::::..: ::.::::: : .
AF0202 IIKARKLSSALSAASAACDHIRDWVLGTPQGTFVSMGVYSDGSYNVPSGLIYSFPVTCAN
          240       250       260       270       280       290    

              310       320       330         
MIK19. GSWKIVQGLSIDEFSREKMDDSARELAEEKDLAYSCLNV
       : ::::::::::::::.:.: .:.::.:::.::.:::. 
AF0202 GEWKIVQGLSIDEFSRKKLDLTAEELTEEKNLAHSCLS 
          300       310       320       330   

Library scan:  0:00:00  total CPU time:  0:00:00