Gene organization of MIK19 (84129 bp)
Chromosome V 20-22 Mb   FTP   Reference   Kazusa Status  
Gene organization of MIK19
figure legend

potential protein genes

identifier direction position No. of
exon
No. of
EST
Definition of the most similar sequence

MIK19.1
-
3059..4825 8 0 protein kinase ZmMEK1
MIK19.2
+
5726..7649 4 2 beta-1,3-glucanase
MIK19.3
-
8090..8915 3 0 profilin 1
MIK19.4
+
13782..14075 1 0 Zea mays retrotransposon Opie-2 5' LTR, primer binding site, gag gene, polpolypurine tract and 3' LTR
MIK19.5
+
14943..16605 7 0 cosmid F28C6
MIK19.6
-
17725..20442 3 0 chromosome 4, BAC clone F21O9 (ESSAII project)
MIK19.7
+
22516..24930 10 0 pyrophosphate-dependent phosphofructo-1-kinase
MIK19.8
+
29030..30690 5 3 IAA-amino acid hydrolase homolog 1
MIK19.9
+
31483..33213 5 0 IAA-amino acid hydrolase homolog 2 precursor
MIK19.10
-
33621..34186 3 1 probable 40s ribosomal protein S30
MIK19.11
+
34850..37043 6 1 NS1 asparaginyl-tRNA synthetase
MIK19.12
-
42211..42972 2 3 60s ribosomal protein L31
MIK19.13
+
43742..44920 2 0 cytosolic malate dehydrogenase
MIK19.14
-
45114..50781 22 0 probable zinc protease pqql (EC 3.4.99.-)
MIK19.15
-
51217..53782 9 0 histone acetyltransferase 1
MIK19.16
+
56191..58808 10 1 SF21 protein
MIK19.17
-
59706..60787 2 0 serine O-acetyltransferase (EC 2.3.1.30) Sat-52
MIK19.18
-
62592..64446 3 0 putative transciption factor
MIK19.19
+
66866..69643 8 0 protein kinase apk1a (EC 2.7.1.-)
MIK19.20
+
76548..77261 1 0 SIRE-1 sequence gag-protease polyprotein
MIK19.21
+
78994..80354 3 1 BAC T02O04 genomic sequence


transcribed regions

identifier direction position Definition of the most similar sequence

MIK19.T1
+
9456..9792 clone TAP0397; 5' end
MIK19.T2
-
10217..10428 clone TAP0397; 3' end
MIK19.T3
+
54501..54959 clone 47C5T7
MIK19.T4
-,+,+
70119..70695 Lambda-PRL2 cDNA clone 246K9T7
clone 104H3T7
clone 162J19T7
clone 179F17T7
clone 170L1T7
clone 168O18T7
clone 196A20M4
clone OBO63; 3' end
Lambda-PRL2 cDNA clone 311F2T7 3'
clone VDV08-17792, 3' end;similar to metallothionein I
clone 141I18T7
clone 116E16T7
clone 167G14T7
clone 164K7T7
clone 201I2T7
clone TAT4B10, 5' end
Lambda-PRL2 cDNA clone 200L16T7
clone 138A20T7


potential RNA genes

identifier direction position No. of
exon
No. of
EST
Definition of the most similar sequence

MIK19.R1
+
54046..54117 1 0 tRNA-Pro(UGG)


Reference
Structural Analysis of Arabidopsis thaliana Chromosome 5. VI. Sequence Features of the Regions of 1,367,185 bp Covered by 19 Physically assigned P1 and TAC Clones (1998) Hirokazu Kotani, Yasukazu Nakamura, Shusei Sato, Erika Asamizu, Takakazu Kaneko, Nobuyuki Miyajima, and Satoshi Tabata DNA Research, 5, 213-216
o Kazusa Status