SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MIJ24.P3 (Universal genetic code) : 264 aa
 vs  library
 searching f21m1220 library

    606 residues in     1 sequences
The best scores are:                              s-w
F21M1220, 606 bases, 25A7 checksum.                (606) 415

>>F21M1220, 606 bases, 25A7 checksum.                (606 aa)
Smith-Waterman score: 415;   30.466% identity in 279 aa overlap

                             10           20             30        
MIJ24.             MFLTKTL--IRR---SLSTFASSPS----D-SLLADKALTFLKRHPYQ
                     ::: .  .::   : ::...::     : ...::  : . :.:  .
F21M12 MFPKSLAVSRKNSNLTKGVSGLRRLCSSSSTITGSPCPPRYDVAVIAD--L-IEKQHWSK
               10        20        30        40           50       

       40         50        60        70          80        90     
MIJ24. LH-HLSANFTPEAASNLLLKSQNDQALILKFLNW--ANPHQFFTLRCKCITLHILTKFKL
       :  :.. ...:.     :..:. :  : :.. .:   :     .:.     :: :.. : 
F21M12 LGVHVT-DINPNELFRQLISSELDPDLCLRYYSWLVKNSDISVSLELTFKLLHSLANAKR
        60         70        80        90       100       110      

          100       110       120       130       140          150 
MIJ24. Y-KTAQILAEDVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSY---SRLSLID
       : :  ..:  :  ... .:. .  .:....   ..: . : . :..: .:   ::. :  
F21M12 YSKIRSFL--DGFVRNGSDHQVHSIFHAISMCDNVCVN-SIIADMLVLAYANNSRFEL--
        120         130       140       150        160       170   

             160       170       180       190       200       210 
MIJ24. KALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNIL
        ..   . .  .:.  ..:: . .. : .. .:. . .: :.:::.. ...:::::.:..
F21M12 -GFEAFKRSGYYGYKLSALSCKPLMIALLKENRSAD-VEYVYKEMIRRKIQPNVFTFNVV
              180       190       200        210       220         

             220       230       240       250       260           
MIJ24. IRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLR       
       : ..: .:... :  ... :.. :: ::::.:::::::::::    .: :. .       
F21M12 INALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLG--GNG-KMYKADAVLKE
     230       240       250       260       270          280      

F21M12 MVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGK
        290       300       310       320       330       340      

F21M12 ISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNM
        350       360       370       380       390       400      

F21M12 LIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG
        410       420       430       440       450       460      

F21M12 LPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATN
        470       480       490       500       510       520      

F21M12 MRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEM
        530       540       550       560       570       580      

F21M12 VDQGFVPDIEGHLFNVSTKS
        590       600      

Library scan:  0:00:00  total CPU time:  0:00:00