SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MIJ24.9 (Universal genetic code) : 515 aa
 vs  library
 searching d45066 library

    380 residues in     1 sequences
The best scores are:                              s-w
D45066, 380 bases, 1688 checksum.                  (380)1084

>>D45066, 380 bases, 1688 checksum.                  (380 aa)
Smith-Waterman score: 1084;   48.223% identity in 394 aa overlap

               10        20        30        40        50        60
MIJ24. MADPAIKLFGKTIPLPELGVVDSSSSYTGFLTETQIPVRLSDSCTGDDDDEEMGDSGLGR

               70        80        90       100       110          
MIJ24. EEGDDVGDGGGESETDKKEEKDSECQEESLRNESNDVTTTTSGITEKTETTKAA--KTNE
                                                       :. : :  ::..
D45066                                        MNPEVLSTDENDKLATRKTEK
                                                      10        20 

      120       130       140       150       160       170        
MIJ24. ESGGTACSQEGKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTM
       :.. .  :.: ::::::::::::::::::::::::::::::::::::: :::::: :::.
D45066 EQNDAPNSKE-KLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTEGGTI
              30         40        50        60        70        80

      180       190       200       210               220          
MIJ24. RNVPVGAGRRKNKSPASHYNRHVSITSAEAMQKVARTDL----QH----PNGANLLTFG-
       :::::::::::::. :::: ::..:.  ::. ..:. :.    .:     ::  .:.:. 
D45066 RNVPVGAGRRKNKNSASHY-RHITIS--EAL-RAAQIDVPIEVNHLASKGNG-RVLNFSV
               90        100          110       120        130     

     230       240       250           260               270       
MIJ24. SDSVLCESMASGLNLVEKSLLK-TQTVLQE---PNEGLKI--------TVPLNQT--N--
       :  : ::::..  . .:...:. :.. ..    : :: .         .: ....  :  
D45066 SPPV-CESMVNVSHPAERKVLNGTRNEFEGAKGPCEGGETGDDCSSASSVTMSSSMKNGA
          140       150       160       170       180       190    

                 280        290       300               310        
MIJ24. ----EEAG--TVSPLP-KVPCFPGPPPTWPYAWNG-VSWTIL-P------FYPPPAYWSC
           .:    ... .: ..::.:: :  :: .:.. .    : :      :::  .::::
D45066 RRFPQEPHMQNINGFPSQIPCLPGVP--WPCSWTAPIPPPALCPPGVPLSFYPA-TYWSC
          200       210       220         230       240        250 

      320       330         340       350       360       370      
MIJ24. PGVSPGAWNSFTWM-PQPNSP-SGSNPNSPTLGKHSRDENAAEPGTAFDETESLGRE-KS
        ..: :.:: . :. :::  :  :  ::::::::::::      :   :: .. . : :.
D45066 -SAS-GSWN-IPWVTPQPCPPIPG--PNSPTLGKHSRD------G---DELQADNSEMKD
                260       270         280                290       

            380       390       400       410         420       430
MIJ24. KPER---CLWVPKTLRIDDPEEAAKSSIWETLGIKKDE-NA-DTFGAFRSSTKEKSSLSE
        :..    . ::::::::::.::::::::::::::.:  .: :  ..:.:.   ::..::
D45066 PPKQKNGSVLVPKTLRIDDPNEAAKSSIWETLGIKNDSIKAVDLSNVFQSKGDLKSNVSE
       300       310       320       330       340       350       

              440       450       460       470       480       490
MIJ24. GRLPGRRPELQANPAALSRKQTNSNKFKGTFIVIHMMYDSQNLESDLTYWTSVVVAATSL
         :    : ::::::::::. :                                      
D45066 -VLS---PVLQANPAALSRSLTFHERS                                 
        360          370       380                                 

              500       510     
MIJ24. FSASAEERTTVFNFLDDRDVKCLPW

Library scan:  0:00:00  total CPU time:  0:00:01