SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MIJ24.12 (Universal genetic code) : 317 aa
 vs  library
 searching atac00233224 library

    268 residues in     1 sequences
The best scores are:                              s-w
ATAC00233224, 268 bases, E4B checksum.             (268) 222

>>ATAC00233224, 268 bases, E4B checksum.             (268 aa)
Smith-Waterman score: 222;   22.745% identity in 255 aa overlap

               10         20          30          40         50    
MIJ24. MFFRRNSQPFR-RATSCSVTLDPQ-RYSTKH-FKRILIVNNV--NID-IDLKTGIVTK-N
          .:.:  .. :..   . : :  :.   :   . :.:. .  ..  . : .... . .
ATAC00  MEKRSS--IKNRGV---LRLPPGFRF---HPTDEELVVQYLRRKVTGLPLPASVIPETD
                  10           20           30        40        50 

            60         70        80        90       100       110  
MIJ24. MAKKEKIEEFEKGN-DKEWFIITERNKVDQGLSQTKRVGNGAKRQKRVDTNGGYWHATVA
       . :..  . .  :. ..: .... :        ..:   :: .:..: .:..:::.::  
ATAC00 VCKSDPWD-LP-GDCESEMYFFSTR--------EAKY-PNG-NRSNR-STGSGYWKATGL
               60         70                 80          90        

            120       130       140       150        160       170 
MIJ24. AQKINAGDGVVGNKRPLAYYDRKPSEDVKTDWLMQEYSL-DHNNDKVRLHFVQDLSYSTS
        ..:.    ::: :. :..:  :: . ..:.:...:: : : ..:.  : . :....   
ATAC00 DKQIGKKKLVVGMKKTLVFYKGKPPNGTRTNWVLHEYRLVDSQQDS--L-YGQNMNWVLC
      100       110       120       130       140          150     

                180       190       200       210        220       
MIJ24. N---KEVGEEKKKQKKGEPVEASEGQQPCNAEYHQPLAPLDS-CQPQPHDLAEQLDLHQP
           :. .. ..:.:. :  :  :...  ..: ..      : : :  .:. .. : .. 
ATAC00 RVFLKKRSNSNSKRKEDEK-EEVENEKETETEREREEENKKSTC-PIFYDFMRK-DTKKK
         160       170        180       190        200        210  

       230       240       250       260       270       280       
MIJ24. EQLQLQQPHDIVYQPQYCLLPEQHQLQPFPDNFSELNSFQQQPVMIPDDLEDFLAELMEP
       .. .  .  :.   :  :                                          
ATAC00 RRRR--RCCDLNLTPATCCCCSSSTSSSSVCSSALTHTSSNDNRQEISYRENKFCLFL  
              220       230       240       250       260          

       290       300       310       
MIJ24. HSLDGDEESNNYGFFEGLFDTEGINDKTLH

Library scan:  0:00:00  total CPU time:  0:00:00