SSEARCH searches a sequence database using the Smith-Waterman algorithm version 2.0u54, July. 1996 Please cite: T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; W.R. Pearson (1991) Genomics 11:635-650 >MHK7.P2 (Universal genetic code) : 217 aa vs library searching atfca15 library 1996 residues in 1 sequences The best scores are: s-w ATFCA15, 1996 bases, 2385 checksum. (1996) 324 >>ATFCA15, 1996 bases, 2385 checksum. (1996 aa) Smith-Waterman score: 324; 33.624% identity in 229 aa overlap ATFCA1 MFDDQEIERSQTIAPALIKAIKESRISIILLSKNYASSSWCLDELLEIVKCKEAMGQIVM 10 20 30 40 50 60 ATFCA1 TVFYGVDPSDVRKQTGEFGRSFNETCSRSTKEKRRKWSQALNHVGNIAGEHFQNWDNESK 70 80 90 100 110 120 10 20 MHK7.P EADVMWLRNPLMHCNPQNA--I :.: . ATFCA1 MIEKISRDISNKLNSTISRDFDDMVGLEAHLEEMKYLLDLDYKDGAMIVGICGPAGIGKT 130 140 150 160 170 180 30 40 50 60 MHK7.P SVACG-NSLI--DHQH----DHLT-TENTG----GFFYAKSNDITIDMFNILNVERVLYP ..: . ::. . : ..:. ..: : :: .... ..: : :. : ATFCA1 TIARALYSLLLSSFQLSCFVENLSGSDNRGLDEYGFKLRLQEQLLSKILN-QNGMRI-YH 190 200 210 220 230 70 80 90 100 110 120 MHK7.P ATGN-QS-LCD---IVKREDV--IKALDKKVTFLDDAN-FGKFCQPNPQDQSKITTVHAS : : ::: .. .:: .: :. .. .... :: :. :.: .. ATFCA1 -LGAIQERLCDQKVLIVLDDVNDLKQLE---ALANETSWFG----PG----SRIIVT--- 240 250 260 270 280 130 140 150 160 170 MHK7.P CCHDTKSKTLWQQLKAHGINVIYHVDYPS-EGALEIFCLYAFKQSSRRDGYEEHAAKVVK :..: : .: :::: ::: .:: : ::::::.:::..:: ::... . .:.. ATFCA1 ----TEDKGLLEQ---HGINKTYHVGFPSIEEALEIFCIYAFRKSSPPDGFKKLTKRVTN 290 300 310 320 330 180 190 200 210 MHK7.P LCGNLPLAIRVVGSSFNGDS-DE-RMLQLYGTETNLDRKI . ::::..::.:::. : . :: . : : ::.:::.: ATFCA1 VFDNLPLGLRVMGSSLRGKGEDEWEAL-LDRLETSLDRNIEGALRVGYDSLQEEEQALFL 340 350 360 370 380 390 ATFCA1 HIAVFFNYNKDEHVIAMLADSNLDVKQGLKILTNKSLVYRSTSGKIVMHKLLQQVGRKAI 400 410 420 430 440 450 ATFCA1 QRQEPWKRHILIDAHEICYVLENDTDTRAALGISLDTSGINKVIISEGAFKRMRNLRFLS 460 470 480 490 500 510 ATFCA1 VYNTRYVKNDQVDIPEDLEFPPHLRLLRWEAYPKLDMKESQLEKLWQGTQPLTNLKKMDL 520 530 540 550 560 570 ATFCA1 TRSSHLKELPDLSNATNLERLELSYCKSLVEIPSSFSELRKLETLVIHNCTKLEVVPTLI 580 590 600 610 620 630 ATFCA1 NLASLDFFNMHGCFQLKKFPGISTHISRLVIDDTLVEELPTSIILCTRLRTLMISGSGNF 640 650 660 670 680 690 ATFCA1 KTLTYLPLSLTYLDLRCTGGCRNLKSLPQLPLSIRWLNACDCESLESVACVSSLNSFVDL 700 710 720 730 740 750 ATFCA1 NFTNCFKLNQETRRDLIQQSFFRSLRILPGREVPETFNHQAKGNVLTIRPESDSQFSASS 760 770 780 790 800 810 ATFCA1 RFKACFVISPTRLITGRKRLISLLCRLISKNGDSINEVYHCFSLPDQSPGTQSEHLCLFH 820 830 840 850 860 870 ATFCA1 YDFHDRDRYFEVDSEILFEFSCTPSDAYEIVQCGVGTYGEEIEQISDWSNASEEIETENI 880 890 900 910 920 930 ATFCA1 SDDVNQYRDRHPCKSDKASKEANHLYLIYMPLNNFSKEKELKTDASMKTDGMADPSSYVN 940 950 960 970 980 990 ATFCA1 HDRDIDQALVSLKKGTQLLKYSRKGRPKFRSFRLSPAVFRRYLRPEKDYLSFSLIYHNGD 1000 1010 1020 1030 1040 1050 ATFCA1 RSLDLICKDKAETEVWFAGLKSLIRQNRNKQAKSEIPEIHDSDCFSTGRPSTASIDFAPN 1060 1070 1080 1090 1100 1110 ATFCA1 NTRRGRTSIDLGIQNSPTKFGSSDVGYERGNMLRPSTDGFRISVSSTPSCSTGTSGPDDI 1120 1130 1140 1150 1160 1170 ATFCA1 ESLGDVYVWGEVWSDGISPDGVVNSTTVKIDIACGVRHIALVTRQGEVFTWEEEAGGRLG 1180 1190 1200 1210 1220 1230 ATFCA1 HGIQVDVCRPKLVEFLALTNIDFVACGEYHTCAVSTSGDLFTWGDGIHNVGLLGHGSDLS 1240 1250 1260 1270 1280 1290 ATFCA1 HWIPKRVSGPVEGLQVLSVACGTWHSALATANGKLFTFGDGAFGVLGHGDRESVSYPKEV 1300 1310 1320 1330 1340 1350 ATFCA1 KMLSGLKTLKVACGVWHTVAIVEVMNQTGTSTSSRKLFTWGDGDKNRLGHGNKETYLLPT 1360 1370 1380 1390 1400 1410 ATFCA1 CVSSLIDYNFNQIACGHTFTVALTTSGHVFTMGGTSHGQLGSSNSDGKLPCLVQDRLVGE 1420 1430 1440 1450 1460 1470 ATFCA1 FVEEISCGDHHVAVLTSRSEVFTWGKGSNGRLGHGDKDDRKTPTLVEALRERHVKSISCG 1480 1490 1500 1510 1520 1530 ATFCA1 ADQSVCSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALKAALAPTPGKPHRVCDACYTK 1540 1550 1560 1570 1580 1590 ATFCA1 LKAGESGYNSNVANRNSTTPTRSLDGTGRPDRDIRSSRILLSPKTEPVKYSEVRSSRSES 1600 1610 1620 1630 1640 1650 ATFCA1 SIVRASQVPALQQLRDVAFPSSLSAIQNAFKPVASSSTSTLPSGTRSSRISSPPRSSGFS 1660 1670 1680 1690 1700 1710 ATFCA1 RGMIDTLKKSNGVINKEMTKLQSQIKNLKEKCDNQGTEIQRLKKTAREASDLAVKHSSKH 1720 1730 1740 1750 1760 1770 ATFCA1 KAATEVMKSVAEHLRELKEKLPPEVSRCEAFESMNSQAEAYLNASEASESCLPTTSLGMG 1780 1790 1800 1810 1820 1830 ATFCA1 QRDPTPSTNTQDQNIEEKQSSNGGNMRSQEPSGTTEASSSSKGGGKELIEQFEPGVYVTY 1840 1850 1860 1870 1880 1890 ATFCA1 VLHKNGGKIFRRVRFSFFVANGDLMSIKQKNGGIAKKIGCLRVPTPTQPQPPASDSVPTP 1900 1910 1920 1930 1940 1950 ATFCA1 TQPQPPASDSVPTPTQPQPPASPTQPNSDQAEDSKEVLDES 1960 1970 1980 1990 Library scan: 0:00:00 total CPU time: 0:00:01