SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MHK7.P1 (Universal genetic code) : 284 aa
 vs  library
 searching nsu31932 library

    462 residues in     1 sequences
The best scores are:                              s-w
NSU31932, 462 bases, 15BA checksum.                (462)1464

>>NSU31932, 462 bases, 15BA checksum.                (462 aa)
Smith-Waterman score: 1464;   72.887% identity in 284 aa overlap

NSU319 MVASPDNNAADGRTVKNKRPIDEWLPITSSRNGQNGGYSAFHNVTAMVGAGVLGLPYAMS
               10        20        30        40        50        60

NSU319 ELGWGPGVTVMVVSWVITLYTLWQMVECKKCPGMLAGTCIDDHKLAVSNVFGNKLGLWIV
               70        80        90       100       110       120

                                                           10      
MHK7.P                                             MIFASVHFVLSHLPNF
                                                   ::::::::::::::::
NSU319 VPQQLVVEVGIDIVYMVTGGKSFQKSIVLVCKDNCKDIKLTYYIMIFASVHFVLSHLPNF
              130       140       150       160       170       180

         20        30        40        50        60         70     
MHK7.P NSISGVSLAAAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTA-GTVFNFFSGLGDVAF
       :.::::::.::.::::: ::::..:   ::: ::.: :.:..:. : .::::::::.:::
NSU319 NAISGVSLVAAIMSLSYCTIAWGASIVLGVQPDVEYEYRAENTGEG-IFNFFSGLGEVAF
              190       200       210       220        230         

          80        90       100       110       120       130     
MHK7.P AYAGHNVVLEIQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDN
       ::::::::::::::::::::::::::::.::.::::.:::::::::..::.::::.: .:
NSU319 AYAGHNVVLEIQATIPSTPEKPSKGPMWKGVLVAYIIVALCYFPVAIIGYWIFGNSVSNN
     240       250       260       270       280       290         

         140       150       160       170       180       190     
MHK7.P ILMSLKKPAWLIATANIFVVIHVIGSYQIYAMPVFDMMETLLVKKLNFRPTTTLRFFVRN
       ::.::.::.:::. :: :::: ..:.::.::.:::::.:: ::.::.:.::  :::..::
NSU319 ILISLEKPTWLIVLANAFVVITLLGAYQLYAIPVFDMLETYLVRKLKFKPTWYLRFMTRN
     300       310       320       330       340       350         

         200       210       220       230       240       250     
MHK7.P FYVAATMFVGMTFPFFGGLLAFFGGFAFAPTTYFLPCVIWLAIYKPKKYSLSWWANWVCI
       .::: :::::. :::. :::.:.::::::::::::::..::.:::::...::: .::.::
NSU319 LYVAFTMFVGIIFPFLWGLLGFLGGFAFAPTTYFLPCIMWLSIYKPKRWGLSWTSNWICI
     360       370       380       390       400       410         

         260       270       280                  
MHK7.P VFGLFLMVLSPIGGLRTIVIQAKGYKFYS              
       . :..: ::.::::::::.:::: :.:.               
NSU319 IVGVMLTVLAPIGGLRTIIIQAKDYNFFYWDSLSGSLAFGKKG
     420       430       440       450       460  

Library scan:  0:00:00  total CPU time:  0:00:00