SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MDK4.P1 (Universal genetic code) : 139 aa
 vs  library
 searching piaemb7r library

    320 residues in     1 sequences
The best scores are:                              s-w
PIAEMB7R, 320 bases, 1316 checksum.                (320) 454

>>PIAEMB7R, 320 bases, 1316 checksum.                (320 aa)
Smith-Waterman score: 454;   45.890% identity in 146 aa overlap

               10        20             30          40        50   
MDK4.P MEISKTLLLVISLVAATCFL----QAKAAG-VYCSNP-YTRCY-RKYIRCPEECPSKTAM
       :  .: :. :.. ::. : .     :.:.: . :..  : :::  .:  :: .::    .
PIAEMB MAANK-LMNVVA-VAV-CVMVMVNAASAVGKAKCTDKWYPRCYGYQY-DCPANCP----Y
                10          20        30        40         50      

            60        70        80        90       100       110   
MDK4.P NSKNKVCYADCDRPTCKSQCRMRKPNCNRPGSACYDPRFIGGDGIVFYFHGKSNEEFSLV
       :     :  :: . :::. :    : :..::..: ::::::::::.:::::: ...: :.
PIAEMB N-----CDMDC-K-TCKTVC----P-CDKPGGVCQDPRFIGGDGIMFYFHGKRDQDFCLI
                    60             70        80        90       100

           120       130                                           
MDK4.P SDSDLQINGRFIGHRPAGRARDFTWI                                  
       :::.:.::..:::.:  : .:::::.                                  
PIAEMB SDSNLHINAHFIGKRGQGMGRDFTWVQSIGVLLEDGRQFYLGAKKVSTWDNSVDQLTMAL
              110       120       130       140       150       160

PIAEMB NGQTLTLPPGEGATWATASGLNVTRSDRANEVVVQVEDKLKISARVVPISEEESRVHNYG
              170       180       190       200       210       220

PIAEMB IIAGEDCFAHLELSFKFYSLSPNVSGVLGQTYGAEYRSPVKMGVAMPIMGGESNYVTSNL
              230       240       250       260       270       280

PIAEMB FAADCKVARFASSSDDEYAITSALDCNSGRGSGHGIVSRR
              290       300       310       320

Library scan:  0:00:00  total CPU time:  0:00:00