SSEARCH searches a sequence database using the Smith-Waterman algorithm version 2.0u54, July. 1996 Please cite: T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; W.R. Pearson (1991) Genomics 11:635-650 >MDK4.13 (Universal genetic code) : 244 aa vs library searching kyk1_dicdi library 1584 residues in 1 sequences The best scores are: s-w KYK1_DICDI, 1584 bases, 584 checksum. (1584) 188 >>KYK1_DICDI, 1584 bases, 584 checksum. (1584 aa) Smith-Waterman score: 188; 26.136% identity in 264 aa overlap KYK1_D MSFKFFKKKLVPSNEYRWDLRKSNSLTLNIEDKSRCSYRLPTSGSKGIAKSTQPFSSSFT 10 20 30 40 50 60 KYK1_D YFELFITNGNGDKICFGLTTNDHPIEVYPGNYQGSYGYSGDGKCYFGTNEGRVYGPSFSS 70 80 90 100 110 120 KYK1_D GDVVGCGYDSSSKTLYFTKNGVYLGVAAQKVNLIGLYPTVGLQNPGESVVINFFGPFSYR 130 140 150 160 170 180 KYK1_D GAPEKPSKQSTIKDSGGSSIIPSEDLIPKEEFEVCRWSEKKNYHGKHVVVRNRTAFLPLD 190 200 210 220 230 240 KYK1_D SPKDTIGGVRATQPFGEGFCYFEVIIDQLDKGQLSIGLANLEYPTFYHVGWMPRSYGYHN 250 260 270 280 290 300 KYK1_D DDGRKFRWREEPGVNEGESYGSSYKKGDIIGCGLSFTSREIFFTKNGMYLGTAFSNVYGV 310 320 330 340 350 360 KYK1_D FYPSVAFNEPGISITGVFGPPFKFSQVTLMLKNVNSTSILVPNGNNNNNSNNNNNNNNNN 370 380 390 400 410 420 KYK1_D IIGNGKITTTTTTSTSPSSINNNEDISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSN 430 440 450 460 470 480 10 20 30 40 MDK4.1 MENQSMSSSSSSTHKHDQKLKSSVVAMEVLEEKETVNNPPQYYNKIYIC :.. :.:.......... .:. .. ..... :: :.:: KYK1_D SSNTNNNNINNTTNNNNSNSNNNNNNNNSNSNSNSNNNNINNNNNNNNNN----NNIY-- 490 500 510 520 530 50 60 70 80 90 100 MDK4.1 YLCKRAFPTPHALGGHGTTHKEDRELERQQIESRLSNKDKSNLLFGGSSQDVLSNDNHL- : :. :. . :.: : :: :. ..: ::.... .:.: KYK1_D -LTKK--PS---I---GST---D--------ES--ST---GSL--GGNNSS--GNNNSSS 540 550 560 110 120 130 140 150 160 MDK4.1 GLSLGPLKSI-EGSSSSNNVN-PLLNVGVPRGTTDMNMNN-YSSHALSTDDINLDLTLGP : :.: .:: . : ...: ::. .: ..:. : :: :::. :: . . :. : KYK1_D G-SIGNNSSIIKQRSPPHSINGPLM---LPPSSTN-NNNNIYSSYN-STT-AGSSTTILP 570 580 590 600 610 170 180 190 200 210 MDK4.1 S--KSI-GDSNNIINNNTNSSFD--GN--LI------IPVRPRVSRYHFVAGNPLDSISR . . : :.... :::..:... :: :. .:. .: : .... : ..: KYK1_D TLNHPIFGNTTS--NNNSSSTLSVGGNNNLLGRHCQSLPIT--ASTNHTLSSS-L-GVSF 620 630 640 650 660 670 220 230 240 MDK4.1 NIP---PSITFPHLNINLSHD-SF--SLQE-NGSGSSHS . : :. : :. .: :.: .: ..:. .:. : KYK1_D SSPSSSPK-TSPRKIVNSSEDLGFVQTFQDQDGQPPSAWRRCGKSIKTKDDITLTIIKKK 680 690 700 710 720 730 KYK1_D TSVAMADRPFSSNSSSTICYFEVYLEGHDKKGSITVGLSHSTYPFIKHIGREPKSYGFSS 740 750 760 770 780 790 KYK1_D EGEKYGGSEIGEPYGPFFFFDGDSIASSCVIGCGINTSTRDIFFTKNGHYLGVAFSRVTS 800 810 820 830 840 850 KYK1_D DPLYPSISFRGVVGGLCVATFPGGHFRFNIEDLPGISPSVWTEALGPDRQGSGFKNWAPN 860 870 880 890 900 910 KYK1_D DVAIWLESFNYGQYRKNFRDNNISGRHLEGITHAMLKNDLGIEPYGHREDIINRLNRMIQ 920 930 940 950 960 970 KYK1_D IWNDKSPDSYPKIAIDSSDKIRWPASGGSSGGINISGGVVIGSSSGSDDGITEISSSSKN 980 990 1000 1010 1020 1030 KYK1_D IRPYKSYTQKEIEDRNRRSTISGGEKKNKYYIDNQMDPHQIGSMDSDGLLPDFGQGPPDE 1040 1050 1060 1070 1080 1090 KYK1_D KNSSKTLSNEQIRYLQQRKDEPPIAISSTGNGGSVSSTGGSSGFLTFPSSNSLTHPPQRD 1100 1110 1120 1130 1140 1150 KYK1_D KPTQEFTHLPPITSNYKGITNTGQPHKSFDQPLELFPRHSAFSNNGNNGNNNNNNNNNNI 1160 1170 1180 1190 1200 1210 KYK1_D KANQQQQQQSSYQQSQTQQQQQHITSTSTSTTNKWIDPFGGWETQSSLSHPPSRPPPPPP 1220 1230 1240 1250 1260 1270 KYK1_D PPPQLPVRSEYEIDFNELEFGQTIGKGFFGEVKRGYWRETDVAIKIIYRDQFKTKSSLVM 1280 1290 1300 1310 1320 1330 KYK1_D FQNEVGILSKLRHPNVVQFLGACTAGGEDHHCIVTEWMGGGSLRQFLTDHFNLLEQNPHI 1340 1350 1360 1370 1380 1390 KYK1_D RLKLALDIAKGMNYLHGWTPPILHRDLSSRNILLDHNIDPKNPVVSSRQDIKCKISDFGL 1400 1410 1420 1430 1440 1450 KYK1_D SRLKKEQASQMTQSVGCIPYMAPEVFKGDSNSEKSDVYSYGMVLFELLTSDEPQQDMKPM 1460 1470 1480 1490 1500 1510 KYK1_D KMAHLAAYESYRPPIPLTTSSKWKEILTQCWDSNPDSRPTFKQIIVHLKEMEDQGVSSFA 1520 1530 1540 1550 1560 1570 KYK1_D SVPVQTIDTGVYA 1580 Library scan: 0:00:00 total CPU time: 0:00:01