SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MDK4.12 (Universal genetic code) : 356 aa
 vs  library
 searching atfca515 library

    379 residues in     1 sequences
The best scores are:                              s-w
ATFCA515, 379 bases, 263E checksum.                (379) 662

>>ATFCA515, 379 bases, 263E checksum.                (379 aa)
Smith-Waterman score: 662;   35.222% identity in 406 aa overlap

                     10            20        30        40        50
MDK4.1 MS-LLL----NQPL-KL-L-C--FRRKPVLVRSSLMQTPPCSIVGVQPCGADHLGRLDVM
       :: :::    .. : :: : :  ::    .  ::   : :  .  . ::: ..  : . .
ATFCA5 MSSLLLRFSSKSSLHKLALRCNTFR----MFSSST--TNPFLLHHAIPCG-EEAQRTESL
               10        20            30          40         50   

                    60        70        80         90       100    
MDK4.1 MM--SRR---TCLEKKVPLELVHSDPMVTIGSSHGWVATLKD-DGILRLQDDFNPAASDT
       :.  ...   : ..: .: .:..:  .:  :::::: . :.. : :: ... . :. : .
ATFCA5 MLDPAKEDYFTTVDKPLPKNLIKSK-LV--GSSHGWGVYLSSPDYIL-ISN-Y-PSRSKS
            60        70         80          90        100         

          110       120       130       140        150       160   
MDK4.1 NPKRIPLPPLVTLPHCQTQIVTNVSMSSSSPEDEDCVVAVKFLG-PQLSFCRPAQRKPEW
       ::: : :::  .:   ::..:..:.:::: ::.:.:..:::..: : .:.  :.: .  .
ATFCA5 NPKIIDLPPRPSLNGSQTELVSGVAMSSS-PEEEECIIAVKYMGRP-VSIYTPGQDSQGF
       110       120       130        140       150        160     

              170       180       190       200       210       220
MDK4.1 I---NVRIANPCFYSSSVMYSEKDDMFRIPGSGGHLIGSWDLGTHMHTPKIQKLRFKKFP
       .   ..:. .  : .:..:::..:. : .:.:::: . :: .:    ::. ..: :. . 
ATFCA5 LLAMSTRLFDY-FEQSKLMYSKRDQRFYMPSSGGHHLWSW-VGLPSTTPQYHELNFSILV
         170        180       190       200        210       220   

               230                  240       250          260     
MDK4.1 NLAKTTR-KLL-DSCCTSE----H------LVESRSTGGEMFLV---KWYKRTAE--IV-
       . ..:.  .:: :.   :.    :      :.. .     .::.   .. .  :.  .: 
ATFCA5 T-GHTSLWSLLQDNVSYSNGTRFHVRVVCLLLRFHVITCSFFLALLGRYVESPANKSLVF
            230       240       250       260       270       280  

             270       280       290       300       310        320
MDK4.1 N-GVAKMGTEALMVFKLDEQGNAVYTQDIGDLCMYLSKSEPFCVPASSFPGL-PSNQVII
       : :    ::. .:::. .:. :  ::.::::::..:...::::: ::::::: : :.  :
ATFCA5 NCG----GTKRFMVFREEEDMNMCYTEDIGDLCIFLGNNEPFCVKASSFPGLNP-NS--I
                290       300       310       320       330        

               330                340         350      
MDK4.1 YDF-DEAGFFFLD-NLR----FIG----GNSTFKA--PFHIPPPNMNN
       : :  : :.   :   :    :      ..:. .   :. ::: ..  
ATFCA5 Y-FLGE-GYGVYDIATRSPRSFTPKSTPSSSSEQIVLPYWIPPMSL  
          340        350       360       370           

Library scan:  0:00:00  total CPU time:  0:00:00