SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MDK4.11 (Universal genetic code) : 369 aa
 vs  library
 searching atfca515 library

    379 residues in     1 sequences
The best scores are:                              s-w
ATFCA515, 379 bases, 263E checksum.                (379) 691

>>ATFCA515, 379 bases, 263E checksum.                (379 aa)
Smith-Waterman score: 691;   36.041% identity in 394 aa overlap

               10        20        30          40         50       
MDK4.1 MALLLNQPLKLLCFRRKPVLVRSSPLLSND--GLSSSLLQTPPCFVVS-AKRCGRLAKEG
                 :: :  :  : . . :  :    .:::   : : :..  :  ::. :.. 
ATFCA5       MSSLLLRFSSKSSLHKLA-LRCNTFRMFSSS--TTNP-FLLHHAIPCGEEAQRT
                     10         20        30           40        50

        60         70        80        90       100       110      
MDK4.1 KLVILNPY-EDECTSLDKKVPMALLYDNELVTIGSSHGWIATLSQDDGLLRLQDDLNPVA
       . ..:.:  ::  :..:: .:  :.  ..::  :::::: . ::. : .: ...   :  
ATFCA5 ESLMLDPAKEDYFTTVDKPLPKNLI-KSKLV--GSSHGWGVYLSSPDYIL-ISN--YPSR
               60        70         80          90        100      

        120       130       140       150       160        170     
MDK4.1 SDTNPKRIPLPPLVTLPHCQTQIVTNVSLSASSPEDEDCVVAVKFLG-PQLSFCRPAQSN
       : .::: : :::  .:   ::..:..:..: ::::.:.:..:::..: : .:.  :.: .
ATFCA5 SKSNPKIIDLPPRPSLNGSQTELVSGVAMS-SSPEEEECIIAVKYMGRP-VSIYTPGQ-D
          110       120       130        140       150        160  

         180        190         200       210             220      
MDK4.1 SEWINIRIENPCF-YL--SRVMYSKKDNMFCIPGSGGHLIGTW-DL-RT----HK-----
       :. . . . .  : :.  :..::::.:. : .:.:::: . .:  :  :    :.     
ATFCA5 SQGFLLAMSTRLFDYFEQSKLMYSKRDQRFYMPSSGGHHLWSWVGLPSTTPQYHELNFSI
             170       180       190       200       210       220 

                  230        240       250        260       270    
MDK4.1 ----H-NLQSLQFQ-NLPKLTKTKQKLLDSCCKSE-HLVESPAGETFLVKWYKKSSSK-I
           : .: :: .: :.   . :. ..   :   . :..      ..: .. .. ..: .
ATFCA5 LVTGHTSLWSL-LQDNVSYSNGTRFHVRVVCLLLRFHVITCSFFLALLGRYVESPANKSL
             230        240       250       260       270       280

           280       290       300       310       320       330   
MDK4.1 IKGIAQMKTQALMVFKLDEQGNAVYTQDIGDLCIFLSKSEPFCVLASSFPGLCPNNVILF
       . . .   :. .:::. .:. :  ::.:::::::::...::::: ::::::: ::. : :
ATFCA5 VFNCG--GTKRFMVFREEEDMNMCYTEDIGDLCIFLGNNEPFCVKASSFPGLNPNS-IYF
                290       300       310       320       330        

            340          350       360              
MDK4.1 DCDEG-GFFDLDD-S--TIITDVMPTSFKSN-----YLMPPQKLD
          :: : .:.   :  ..     :.: .:.     : .::..: 
ATFCA5 -LGEGYGVYDIATRSPRSFTPKSTPSS-SSEQIVLPYWIPPMSL 
        340       350       360        370          

Library scan:  0:00:00  total CPU time:  0:00:00