SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MDK4.10 (Universal genetic code) : 462 aa
 vs  library
 searching yie4_yeast library

    298 residues in     1 sequences
The best scores are:                              s-w
YIE4_YEAST, 298 bases, 151D checksum.              (298) 369

>>YIE4_YEAST, 298 bases, 151D checksum.              (298 aa)
Smith-Waterman score: 369;   30.976% identity in 297 aa overlap

                              10           20        30        40  
MDK4.1                MYLLILFHLLCRG---PRWASVNLGIFICMQCSGIHRSLGVHISK
                                :..   ::::: .::.:::..:.:::::::.::::
YIE4_Y MSTSVPVKKALSALLRDPGNSHCADCKAQLHPRWASWSLGVFICIKCAGIHRSLGTHISK
               10        20        30        40        50        60

              50        60         70            80          90    
MDK4.1 VVS-HFPFYICSICHSGHMAPRAAMGND-KANSYWEA----ELPPNY--DRVGIENFIRA
       : :  .  .     .  :..    . :. .::::.::    ::      :  ...:::. 
YIE4_Y VKSVDLDTW-----KEEHLVKLIQFKNNLRANSYYEATLADELKQRKITDTSSLQNFIKN
                    70        80        90       100       110     

          100            110       120       130        140        
MDK4.1 KYEEKRWV---S--RGEKARSPPRVEQERRKSVERSGPGYE-HGHSSSPVNLFEERKTIP
       ::: :.:.   :  .: .  . : : .  . :...: :. . .  .::  : ... .: :
YIE4_Y KYEYKKWIGDLSSIEGLNDSTEP-VLH--KPSANHSLPASNARLDQSS--NSLQKTQTQP
         120       130        140         150       160         170

      150           160       170       180       190       200    
MDK4.1 ASR----TRNNVAATRINLPVPPQGPSQVIKPQQKMESAATPVEREKQAVNVAPASDPPK
        :.    .:.:..   .:: :     :.. . . .. :.:: .     :.:.  ..   .
YIE4_Y PSHLLSTSRSNTSL--LNLQVSSL--SKTTS-NTSVTSSATSI----GAANTKTGN---R
              180         190          200           210           

             210         220          230       240       250      
MDK4.1 V-DFA--TDLF-NMLSM-DDSTTNT-SEAT--PGDTPADDNSWAGFQSAGSGQTAEKIVT
       : .:.  .::  ..::. .  ...: :. .   . ::   :. . :  ...: :: .  .
YIE4_Y VGEFGQRNDLKKSILSLYSKPSAQTQSQNSFFTSTTPQPCNTPSPF--VNTGITATNNNS
      220       230       240       250       260         270      

        260       270       280       290       300       310      
MDK4.1 AKPAESSSPPASSSDFEDLFKDTPNLTTQQAPKDVKGDIMSLFEKTNIVSPFAMHQQQVA
        . ..:::   : .: : :::..                                     
YIE4_Y MN-SNSSSN-ISLDDNE-LFKNVWS                                   
         280        290                                            

        320       330       340       350       360       370      
MDK4.1 MLAQQQALYMAAAKAAGGTPNGVNQQAIANALNVASANWSNPGGYQIPGMTNPVGGQADL

        380       390       400       410       420       430      
MDK4.1 QKLMQNMNMNANMNTRPAQPQENTLQYPSSSFYTMGQANQVNGMTPNSTGKPQSSSATQP

        440       450       460  
MDK4.1 TSTTPSSQSGKDFDFSSLMDGMFTKH

Library scan:  0:00:00  total CPU time:  0:00:00