SSEARCH searches a sequence database
 using the Smith-Waterman algorithm
 version 2.0u54, July. 1996
Please cite:
 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 
 W.R. Pearson (1991) Genomics 11:635-650

 >MDH9.P1 (Universal genetic code) : 117 aa
 vs  library
 searching sp:P22738:RL3B_ARATH library

    390 residues in     1 sequences
The best scores are:                              s-w
sp|P22738|RL3B_ARATH                               (390) 503

>>sp|P22738|RL3B_ARATH                               (390 aa)
Smith-Waterman score: 503;   60.305% identity in 131 aa overlap

sp|P22 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDV
               10        20        30        40        50        60

sp|P22 EKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYK
               70        80        90       100       110       120

sp|P22 NWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGVKQKKAH
              130       140       150       160       170       180

sp|P22 LNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTR
              190       200       210       220       230       240

                                   10        20                  30
MDH9.P                  SH--R-KFEHPRHGSLGFLPRKRANR--HR-GK-G------MS
                         :  : ..   : :. :.  : . :.  .: :: :      :.
sp|P22 LPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGKVGQETHSAMT
              250       260       270       280       290       300

                 40        50        60        70        80        
MDH9.P -F-RTEKEITPMGGFAHYGIVKDDYLMIKGCCMGPKKRVVTLRQSLLRQTSRLAMEVINL
        . ::::.::::::: ::::::.:::::::::.:::::::::::.::.:::::::: :.:
sp|P22 EYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKL
              310       320       330       340       350       360

       90       100       110        
MDH9.P KFVDTSSKGGHGHFQTSEEKAKYFGRAAR 
       ::.:..:.::::.::::.::::..::. . 
sp|P22 KFIDAASNGGHGRFQTSQEKAKFYGRTIKA
              370       380       390

Library scan:  0:00:00  total CPU time:  0:00:00